PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G327300.5

Common Name

B456_009G327300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 301aa MW: 33525 Da PI: 6.5331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G327300.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.7	1.4e-15	53	102	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P+ ++K + a+ L +++eY+++Lq Gorai.009G327300.5 53 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 102 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.03E-18	49	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-23	49	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.999	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-13	53	106	No hit	No description
Pfam	PF00010	5.9E-13	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MRTGKQSQEE EEYEEEEFGS KKQGPSSNQI MSGNAINNSN KGGKNSDKAN AIRSKHSVTE 60 QRRRSKINER FQVLRDIIPN TDQKRDTASF LLEVIEYVQY LQEKVKKYEG SYQEWNSEPA 120 KLMPWRNSHW RVQSFVGQQQ AIKNGSDPGS AFAGKFNENN ININPTMIAS AQNPVESDPV 180 RDTMSKAMDQ QPELGSRGMP LPIQVNQQED LTIEGGTINI SSVYSEELLN SLTQALQSAG 240 LDLSQANISV QIDLGKHANR GLTSGTSAKD PQSAPFQAMT HHRDVSNGEE SDHAQKRMKK 300 *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603188.1	0.0	PREDICTED: transcription factor BIM2-like isoform X2
Swissprot	Q9CAA4	1e-114	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D2UXC3	0.0	A0A0D2UXC3_GOSRA; Uncharacterized protein
STRING	Gorai.009G327300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-103	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Gorai.009G327300.5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]