PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G314600.1

Common Name

B456_009G314600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 975aa MW: 105922 Da PI: 5.308

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G314600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	549	589	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T eE e+++d + +G++ +++Ia+ + ++t +c+++++k Gorai.009G314600.1 549 TSEEKEIFIDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYKN 589 89************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-10	532	592	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.579	543	594	IPR017884	SANT domain
SMART	SM00717	2.1E-5	544	592	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-4	549	591	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.491	747	798	IPR017884	SANT domain
SMART	SM00717	0.095	748	796	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.16E-7	749	798	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MVSVDDMLFL HFLYSDFVNT SEQLQKDLHD NKTSGVNGLG TGQRCERGNS VGSINWKPLK 60 WSCSRSLSSW GSGFSHSSSS KSLGAACVIS AAPSGETTPR KKPCLGWGQG LAKYEKKKVE 120 CPDKSMNRVE ATTSAGSTES SNSMSSNLAD KSPRVLGFSD CSSSATPSSV DCGSSPGVED 180 KSFFQAANFD NDISNLCSSP SLRSQNHPGG SAFSFEKLDT NSVIHLGSSL IDLLQSDDPS 240 TVILCQLPAT SSSLPDEENG KTCEEQKIVS VMVVMGILMV VSKFVEPLSL EKVVSASDNL 300 DTSQLTTMDE VVLVTASSNE GSCTPISAEG SMVKKIDDNA HVPGSLNYDA GRENIVYVEI 360 LTPYKELENG ACKVFNNRLP KDRYRNEISE IHNAASCQTD SSIRKRIAMQ KQYLRFKERS 420 LSLKFKAFHH AWNEDMRLLS VRKRHAKSQK KYEFSLCSTD GGYQKHCSSI LSHSLLAQYL 480 ILEPRTVMIN IASKLLLDSN GRLYRIALKM PGLVLDEKEK QVSRFISSNG LVEDPCAAEK 540 ERALINPSTS EEKEIFIDKL AAFGKDFRKI ASFLDHKTTA DCVEFYYKNL KSECFERKKK 600 LDLSKQGKSF MNTYLLTSRK KWSRDFNAAS LDVLGAASVI TAHAENAMQN QKTSSGRIFI 660 ESHCNSRTSQ FDDSIAKRSS SSEIIWKDEV AVAADVLAGI CGSLSSKAMS SCIIGSADPG 720 ESLPLPSTSD ATLNIDDTCS DNSCWEMDPA DWLDEEKSVF IQAVLSYGKD FGMISQSVGT 780 SSRDQCKVFF SKAHKCLGLD LIHPRTGSIG TPKSDDAIGD GSDTGDACVL ESSVVCSKKL 840 VSKMEDLPSS IVSMDFDESD INREVSLQTD LNLSDEKNGR LIDHRDSEAV EAMVSDVGQT 900 EPISEGVGDD IVVDGSKAES VYVHRTAALA NLNAVRNHVA EQGPGVSIAV SGALGEAVDP 960 CVSRVDTVLE PKSDT

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MVSVDDMLFL HFLYSDFVNT SEQLQKDLHD NKTSGVNGLG TGQRCERGNS VGSINWKPLK  60
WSCSRSLSSW GSGFSHSSSS KSLGAACVIS AAPSGETTPR KKPCLGWGQG LAKYEKKKVE  120
CPDKSMNRVE ATTSAGSTES SNSMSSNLAD KSPRVLGFSD CSSSATPSSV DCGSSPGVED  180
KSFFQAANFD NDISNLCSSP SLRSQNHPGG SAFSFEKLDT NSVIHLGSSL IDLLQSDDPS  240
TVILCQLPAT SSSLPDEENG KTCEEQKIVS VMVVMGILMV VSKFVEPLSL EKVVSASDNL  300
DTSQLTTMDE VVLVTASSNE GSCTPISAEG SMVKKIDDNA HVPGSLNYDA GRENIVYVEI  360
LTPYKELENG ACKVFNNRLP KDRYRNEISE IHNAASCQTD SSIRKRIAMQ KQYLRFKERS  420
LSLKFKAFHH AWNEDMRLLS VRKRHAKSQK KYEFSLCSTD GGYQKHCSSI LSHSLLAQYL  480
ILEPRTVMIN IASKLLLDSN GRLYRIALKM PGLVLDEKEK QVSRFISSNG LVEDPCAAEK  540
ERALINPSTS EEKEIFIDKL AAFGKDFRKI ASFLDHKTTA DCVEFYYKNL KSECFERKKK  600
LDLSKQGKSF MNTYLLTSRK KWSRDFNAAS LDVLGAASVI TAHAENAMQN QKTSSGRIFI  660
ESHCNSRTSQ FDDSIAKRSS SSEIIWKDEV AVAADVLAGI CGSLSSKAMS SCIIGSADPG  720
ESLPLPSTSD ATLNIDDTCS DNSCWEMDPA DWLDEEKSVF IQAVLSYGKD FGMISQSVGT  780
SSRDQCKVFF SKAHKCLGLD LIHPRTGSIG TPKSDDAIGD GSDTGDACVL ESSVVCSKKL  840
VSKMEDLPSS IVSMDFDESD INREVSLQTD LNLSDEKNGR LIDHRDSEAV EAMVSDVGQT  900
EPISEGVGDD IVVDGSKAES VYVHRTAALA NLNAVRNHVA EQGPGVSIAV SGALGEAVDP  960
CVSRVDTVLE PKSDT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578805	1e-60	JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022745648.1	0.0	uncharacterized protein LOC111295980 isoform X3
TrEMBL	A0A0D2SBN0	0.0	A0A0D2SBN0_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G314600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	7e-97	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G314600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]