 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.009G309000.1 |
Common Name | B456_009G309000, LOC105770837 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
NAC |
Protein Properties |
Length: 592aa MW: 66330.2 Da PI: 4.4937 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G309000.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 166.2 | 1.1e-51 | 9 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
l+pGfrFhPtdeelv +yLk+k+ +++ +++i+ +diy++ePwdLp k k+k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd
Gorai.009G309000.1 9 LAPGFRFHPTDEELVRYYLKRKILNRP--SFDAISVIDIYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKD 97
579**********************99..3478**************95347777888********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ ++++vg+kktLv++kgrap+ge+t+Wvmheyrl
Gorai.009G309000.1 98 RAIRF-RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135
****9.999****************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009644 | Biological Process | response to high light intensity |
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 592 aa
Download sequence Send
to blast |
MGRDSATSLA PGFRFHPTDE ELVRYYLKRK ILNRPSFDAI SVIDIYRSEP WDLPDKSKLK 60 SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRAI RFRERVVGMK KTLVYHKGRA 120 PRGERTNWVM HEYRLTDETL EKGGIQQDAF VLCRVFQKSG SGPKNGEQYG APFIEEEWED 180 DEAVFVPGQQ DASAHEEAAN EDAFVEVNDI DQNLDIGNPS ESNILPLNGY CGESSNHVEH 240 SREFSEDDQN LQNSMHENAF LPSSFYYGES SNCGEHSIEF KEDYQKPIRM HATEGDSKPH 300 HELVVADSPE QNLIATNGKP VKDEYVLEPI ENITSANYVL GNPYLDHTSY LPTNDELFLE 360 ANDFSNPIYP ESELFDINEY LLFYDADDQS LAFDCDEIVG SEIPVSDQEP LTETHTNEGT 420 EQDLNASEHV EEHGNSDASS SKQELEATEF DLGTKYPFMK RASHMLGSLP APPAFASEFP 480 PKDAAIKLNS ASHASSSVHV MAGMIRITDT TSSGNRLDWS YGKNGNLNIV LSFSLPQGDI 540 DSSSFLPMAS LLSGKTGPVS ARGWFFLMLF SVLIISASVK IGTCFCTRYG L*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-45 | 8 | 164 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-45 | 8 | 164 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-45 | 8 | 164 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-45 | 8 | 164 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-45 | 8 | 164 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-45 | 8 | 164 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | JQ914144 | 0.0 | JQ914144.1 Gossypium hirsutum NAC domain protein 13 (NAC13) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liang M, et al.
Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Gladman NP,Marshall RS,Lee KH,Vierstra RD
The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] - Tang Y,Zhao CY,Tan ST,Xue HW
Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078. PLoS Genet., 2016. 12(8): p. e1006252 [PMID:27529511]
|