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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G302800.1 | ||||||||
Common Name | B456_009G302800, LOC105770866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17707.7 Da PI: 10.1441 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.1 | 1.5e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+ r++t+ kR++g+lKK +EL +LC++ ++ iifss Gorai.009G302800.1 10 LISNEYARKTTLKKRKAGLLKKLSELTTLCGVAACAIIFSS 50 59**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.58E-19 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.152 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.13E-20 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 8.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGRKATVYEL ISNEYARKTT LKKRKAGLLK KLSELTTLCG VAACAIIFSS YDAQPDVWPS 60 KAEACQVLKK FKSSPAQQRG KNMMDQTVLL KRSILQLNGR LEKRKKKNRE LEKELALAET 120 MAGENNCDWN NLEQLKELDY QLQENIKLIT DKIKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447675.1 | 1e-109 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_012447676.1 | 1e-109 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D2UW91 | 1e-108 | A0A0D2UW91_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5SIH3 | 1e-108 | A0A2P5SIH3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G302800.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-17 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G302800.1 |
Entrez Gene | 105770866 |
Publications ? help Back to Top | |||
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