PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 557aa MW: 60463.6 Da PI: 4.7629

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G301100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Gorai.009G301100.1 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	56.1	8.7e-18	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++m+ gRt++++k++w++ Gorai.009G301100.1 93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHMP-GRTDNEIKNYWNT 136 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.037	35	87	IPR017930	Myb domain
SMART	SM00717	2.4E-15	39	89	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.39E-30	39	134	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-15	40	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-24	41	94	IPR009057	Homeodomain-like
CDD	cd00167	6.41E-12	42	87	No hit	No description
PROSITE profile	PS51294	26.958	88	142	IPR017930	Myb domain
SMART	SM00717	1.3E-17	92	140	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	93	136	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-26	95	141	IPR009057	Homeodomain-like
CDD	cd00167	6.29E-13	95	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045926	Biological Process	negative regulation of growth
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MSHTKHERED GMLSKDQTES PLIDDGSCGG GGAGGVVLKK GPWTSAEDAI LIDYVKKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA 120 HMPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQALQE SHSTSVVNAL DKGPNDILQN 180 NSYEIPDVIF DSLKANQNVL PYVPELPVLS ASSMLMKGLG SSQYCGFMQP TIHRQKRLRE 240 SPAFFPGYTG AVKNECPLFM QFQEDISDKA AGSFGLSFPI EPDPAAKNSQ PFGVFPGSHT 300 LSNGNFSASE PPLEAVKLEL PSLQYPETEL GNWGTLTCPP PLLESVDAFI QSPPPTSGLE 360 SDSLSPRNSG LLDALLHEAK TLSSAKNHAS DKSSNSSTPG DIAEGSNFNI CETEWEKCGE 420 PLSPMGNSAT SIFSECISAS GSSLDEQPPA ETVTESHVKS EPADRVLTPE IQKEAPIRLD 480 SSGPDTLLAS NWLEQGSGYD KDQAILTDAI SSLLGDDLRS EYKNMEEGTS ISSQAWGLDS 540 CAWNNMPAVC QMSELP*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MSHTKHERED GMLSKDQTES PLIDDGSCGG GGAGGVVLKK GPWTSAEDAI LIDYVKKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA  120
HMPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQALQE SHSTSVVNAL DKGPNDILQN  180
NSYEIPDVIF DSLKANQNVL PYVPELPVLS ASSMLMKGLG SSQYCGFMQP TIHRQKRLRE  240
SPAFFPGYTG AVKNECPLFM QFQEDISDKA AGSFGLSFPI EPDPAAKNSQ PFGVFPGSHT  300
LSNGNFSASE PPLEAVKLEL PSLQYPETEL GNWGTLTCPP PLLESVDAFI QSPPPTSGLE  360
SDSLSPRNSG LLDALLHEAK TLSSAKNHAS DKSSNSSTPG DIAEGSNFNI CETEWEKCGE  420
PLSPMGNSAT SIFSECISAS GSSLDEQPPA ETVTESHVKS EPADRVLTPE IQKEAPIRLD  480
SSGPDTLLAS NWLEQGSGYD KDQAILTDAI SSLLGDDLRS EYKNMEEGTS ISSQAWGLDS  540
CAWNNMPAVC QMSELP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-31	38	141	5	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00490	DAP	Transfer from AT5G06100	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459146	7e-64	AJ459146.1 Gossypium hirsutum partial myb118 gene, clone pGhMYB118.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447380.1	0.0	PREDICTED: transcription factor GAMYB-like
Refseq	XP_012447381.1	0.0	PREDICTED: transcription factor GAMYB-like
Refseq	XP_012447382.1	0.0	PREDICTED: transcription factor GAMYB-like
Refseq	XP_012447383.1	0.0	PREDICTED: transcription factor GAMYB-like
TrEMBL	A0A0D2UW46	0.0	A0A0D2UW46_GOSRA; Uncharacterized protein
STRING	Gorai.009G301100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3802	28	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-142	myb domain protein 33

Link Out ? help Back to Top
Phytozome	Gorai.009G301100.1
Entrez Gene	105770643

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]