PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G288000.1 | ||||||||
Common Name | B456_009G288000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 283aa MW: 32752.9 Da PI: 10.2407 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.8 | 2.2e-31 | 67 | 117 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ Gorai.009G288000.1 67 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSN 117 79***********************************************95 PP | |||||||
2 | K-box | 109.4 | 4e-36 | 135 | 231 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s+++ ++e +a+++qqe+akL+++i++Lq++ Rhl+G++L+sL++keL+qLe++Le+++++iRskK+e+ll++ie+ qk+e el++e +L Gorai.009G288000.1 135 SNTNTVTEINAQYYQQESAKLRQQIQMLQNSSRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREVELENESVCL 225 5556699************************************************************************************ PP K-box 95 rkklee 100 r+k++e Gorai.009G288000.1 226 RAKIAE 231 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.95 | 59 | 119 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-41 | 59 | 118 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-33 | 60 | 140 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-41 | 60 | 133 | No hit | No description |
PRINTS | PR00404 | 1.6E-32 | 61 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 61 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 68 | 115 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 81 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 96 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-26 | 144 | 229 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.115 | 145 | 235 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MKKISFPSII THKTPLPTTT KKTYDGVFFI FQTKFFFRGC WFFFSLITII AGIYKRVKMG 60 RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSTRG RLYEYSNNNI 120 RSTIERYKKA CSGTSNTNTV TEINAQYYQQ ESAKLRQQIQ MLQNSSRHLM GDSLSSLTVK 180 ELKQLENRLE RGITRIRSKK HEMLLAEIEY FQKREVELEN ESVCLRAKIA EIERVEEANM 240 VTGEELNAIQ ALASRNFFTP NVIERGTPTP YSHHDKKILH LG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 5e-20 | 59 | 140 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 5e-20 | 59 | 140 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 5e-20 | 59 | 140 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 5e-20 | 59 | 140 | 1 | 83 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF190548 | 0.0 | EF190548.1 Gossypium hirsutum MADS-box protein MADS5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447616.1 | 1e-179 | PREDICTED: agamous-like MADS-box protein AGL11 isoform X2 | ||||
Swissprot | F6I457 | 1e-132 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A0D2TTM3 | 0.0 | A0A0D2TTM3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G288000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4994 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.3 | 1e-120 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G288000.1 |