PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G284300.1

Common Name

B456_009G284300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 22103.2 Da PI: 9.362

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G284300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.1	5.6e-19	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien+ r +tfskRr gi KK ELS+LC++e++ iifs+ gk +++ Gorai.009G284300.1 17 KMIENQDDRLITFSKRRSGIYKKIGELSTLCGTEILFIIFSPAGKPFTF 65 68*******************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.15E-23	9	79	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.535	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.0E-26	9	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-20	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MANTGKKTKG KQKIEIKMIE NQDDRLITFS KRRSGIYKKI GELSTLCGTE ILFIIFSPAG 60 KPFTFGHPSI EFIANRFLNG NIPVIDDMHA LIEDHRTVRI NKLIQLYNEV QSQIDASNET 120 QRVLAQQITS GGDSNRWWET PLDQLNPREL YERYSHFSKL LDLFYISRSK KIATASSTVA 180 PTGPAEDAPT NFPLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	2e-13	2	76	10	83	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	2e-13	2	76	10	83	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684252.1	1e-128	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2S9Q1	1e-143	A0A0D2S9Q1_GOSRA; Uncharacterized protein
STRING	Gorai.009G284300.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	3e-29	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.009G284300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]