PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G279600.3

Common Name

B456_009G279600, LOC105770147

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 357aa MW: 38844.1 Da PI: 4.5287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G279600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	305	344	10	54
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r R+d+i++ + L++l+P +K + + +L +A++Y+k L Gorai.009G279600.3 305 RMRMDKIRETVSVLQSLIPGvE-----GK-DAIVVLDEAIDYLKFL 344 99****************44.....44.5599********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.81	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0018	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-8	304	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.93E-6	305	349	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-7	305	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGEGCGSWFP LAWQSHNMNP LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH 60 LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF 120 LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF 180 DDNETDVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV 240 ASSSGLTKKR KLLDGSNDDT PLLMDNTSSL NHCRCSEQED DADSSFANGQ NLRSDGMHLS 300 SGNKRMRMDK IRETVSVLQS LIPGVEGKDA IVVLDEAIDY LKFLKRKAET LGLSSP*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGEGCGSWFP LAWQSHNMNP LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH  60
LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF  120
LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF  180
DDNETDVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV  240
ASSSGLTKKR KLLDGSNDDT PLLMDNTSSL NHCRCSEQED DADSSFANGQ NLRSDGMHLS  300
SGNKRMRMDK IRETVSVLQS LIPGVEGKDA IVVLDEAIDY LKFLKRKAET LGLSSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446678.1	0.0	PREDICTED: transcription factor bHLH145-like
TrEMBL	A0A0D2TST2	0.0	A0A0D2TST2_GOSRA; Uncharacterized protein
STRING	Gorai.009G279600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G279600.3
Entrez Gene	105770147

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]