PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G279300.1

Common Name

B456_009G279300, LOC105771040

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 1002aa MW: 114011 Da PI: 4.6728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G279300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51774	44.542	11	91	IPR011684	Protein Networked (NET), actin-binding (NAB) domain
Pfam	PF07765	1.9E-34	12	85	IPR011684	Protein Networked (NET), actin-binding (NAB) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005886	Cellular Component	plasma membrane
GO:0003779	Molecular Function	actin binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MMLQKVASNA YSWWWASHIR TKQSKWLEQN LHDVEEKVSN MLEIIDDDGD SFAQRANMYY 60 RKRPELLAIV EDTYRAYRAL AERFDYLSRD LQSANRTIAT VFPDQVPYSL HDEDDENSCL 120 VLTSSSLNKS KSLKPGSRVP SPKTDFRSQS MLLLRKGQLK KAFSSAKAAS SLNSGLSKEE 180 ALEEINKLQK EILEMQTERE LVKNSYEQGY NKLCEIENDI TEKQKRIYSL QDEYDIRSAI 240 DDNEARILMA NRVLKTCQES LVKLQETHEQ STEEGRVESK RIKKVNEAFE ALRKKFNSPQ 300 TDQQKQKKAS SARDVDNMVY EFNSAEKERE YMELLQKEIE EKLELDSSSS LTMSQLADKI 360 DDLVQRVVNM ETAVFSENAS VKRLKSDADE LQEHVKSLEE DEEVLAEGSD SMEQRISVLE 420 GELSGVKELL KTIIEQNNSL KAHFTAASCD INHLSVNLHA VKMDEEVENA ELSKEGKPKV 480 DAKPNRKTKE YCTELLPRDS PALDTGSEME EKDEDVSAEE INTVDSESRN KFDVDSTKDS 540 EVINEFKDEK KSLSKTASCT TDTENPQVET EEEELPNWRN LYLSGLDERE KVLLDEYSSV 600 LHNYKDVRKK LKEVDQKNRD SFYELASQIK ELKSALAARD EEIQSSRQHL SFIDENKDGN 660 LSEYEASHAI MSPESTLTES IQASPVAAGE GKGEPIENPG EGKRESTEKA GEGKGESIEN 720 PGEGEGESIE NPGEGEGESI KKAGEKSKGD AMQARSLTRS RSILTVEDKI RSDIDELLEE 780 NLAFWLRFST CFHQIQKYQN SVKDLKAELS KMRERKKQEA GGKEEPVGSE ARPIYAHFRE 840 IKTELTLWLE NNAVLKDEVQ CRYSSLCNIQ EEIERISNVS GHEGEPQFNG YQAAKFQGEI 900 INMKQENNKV SNELNAGFDC VKQLKEEVEN LMVELDKEIE AATSKNQQSV SRSRSRIPLR 960 SFLFGIKLKN KWQQKGPSMF ACGHPTLQRQ YSYLTDPTDP S*

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MMLQKVASNA YSWWWASHIR TKQSKWLEQN LHDVEEKVSN MLEIIDDDGD SFAQRANMYY  60
RKRPELLAIV EDTYRAYRAL AERFDYLSRD LQSANRTIAT VFPDQVPYSL HDEDDENSCL  120
VLTSSSLNKS KSLKPGSRVP SPKTDFRSQS MLLLRKGQLK KAFSSAKAAS SLNSGLSKEE  180
ALEEINKLQK EILEMQTERE LVKNSYEQGY NKLCEIENDI TEKQKRIYSL QDEYDIRSAI  240
DDNEARILMA NRVLKTCQES LVKLQETHEQ STEEGRVESK RIKKVNEAFE ALRKKFNSPQ  300
TDQQKQKKAS SARDVDNMVY EFNSAEKERE YMELLQKEIE EKLELDSSSS LTMSQLADKI  360
DDLVQRVVNM ETAVFSENAS VKRLKSDADE LQEHVKSLEE DEEVLAEGSD SMEQRISVLE  420
GELSGVKELL KTIIEQNNSL KAHFTAASCD INHLSVNLHA VKMDEEVENA ELSKEGKPKV  480
DAKPNRKTKE YCTELLPRDS PALDTGSEME EKDEDVSAEE INTVDSESRN KFDVDSTKDS  540
EVINEFKDEK KSLSKTASCT TDTENPQVET EEEELPNWRN LYLSGLDERE KVLLDEYSSV  600
LHNYKDVRKK LKEVDQKNRD SFYELASQIK ELKSALAARD EEIQSSRQHL SFIDENKDGN  660
LSEYEASHAI MSPESTLTES IQASPVAAGE GKGEPIENPG EGKRESTEKA GEGKGESIEN  720
PGEGEGESIE NPGEGEGESI KKAGEKSKGD AMQARSLTRS RSILTVEDKI RSDIDELLEE  780
NLAFWLRFST CFHQIQKYQN SVKDLKAELS KMRERKKQEA GGKEEPVGSE ARPIYAHFRE  840
IKTELTLWLE NNAVLKDEVQ CRYSSLCNIQ EEIERISNVS GHEGEPQFNG YQAAKFQGEI  900
INMKQENNKV SNELNAGFDC VKQLKEEVEN LMVELDKEIE AATSKNQQSV SRSRSRIPLR  960
SFLFGIKLKN KWQQKGPSMF ACGHPTLQRQ YSYLTDPTDP S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447896.1	0.0	PREDICTED: protein NETWORKED 2A-like
TrEMBL	A0A0D2UV26	0.0	A0A0D2UV26_GOSRA; Uncharacterized protein
STRING	Gorai.009G279300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4169	3	4

Link Out ? help Back to Top
Phytozome	Gorai.009G279300.1
Entrez Gene	105771040

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]