PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G260000.1

Common Name

B456_009G260000, LOC105769884

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 652aa MW: 73602.7 Da PI: 4.5891

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G260000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.9	1.4e-51	21	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLk+k+ ++kl+l ++i+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++ r+nrat +gyWkatgkd+ Gorai.009G260000.1 21 PPGFRFHPTDEELVLYYLKRKICRRKLKL-DIIRETDVYKWDPEELPaQsILKSGDRQWFFFSPRDRKYPNAARSNRATGHGYWKATGKDR 110 8**************************.99**********96346778999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ ++++vg+kktLvfy+grap ge+tdWvmhey+l Gorai.009G260000.1 111 TVTC-NSRTVGVKKTLVFYRGRAPIGERTDWVMHEYTL 147 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-59	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	54.597	20	170	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070301	Biological Process	cellular response to hydrogen peroxide
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MTVAAKAATT GSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICRRKLKLD IIRETDVYKW 60 DPEELPAQSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG 120 VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ 180 YGAPFKEEEW ADEEYASKAV DVITPVKHPN EAFPDDVEKA KNQIQSPLND IEEFMRQFAA 240 EPALPQPQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PVEVVHDHAS FELSQSPTSR 300 LQLQEAPEDA SVSDQFEQIP QICEEDFLEI DDLTSNVEKP AENGLQFNDW DGLGEFDLYH 360 DAAMFLQDIG PIEQGIVPFS YTENMINQVS YPLEPQLQHQ SNTYHMDQEL QFQLNGTGVD 420 EQLQLQSNAF GNNQQVQSQL NTIGDNQPQL NAFEDGILNQ VGYQFHSSAN NMMDQQLVPN 480 STVDQVDYHL PFQSFGNEME RQLQMDQING SIWINDQSGD VFTPSGSNLG NASSSSGLVY 540 NGNNQDEGDK NGEGASRFST AVWSFVDSIP TTPASASESP SVNRAFERMS SFSRLRMNVR 600 NTNALTVNGG TTARRRSRNK GFFFFSILGA LCAILWFLIG MVRVVRSSIS S*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MTVAAKAATT GSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICRRKLKLD IIRETDVYKW  60
DPEELPAQSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG  120
VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEEW ADEEYASKAV DVITPVKHPN EAFPDDVEKA KNQIQSPLND IEEFMRQFAA  240
EPALPQPQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PVEVVHDHAS FELSQSPTSR  300
LQLQEAPEDA SVSDQFEQIP QICEEDFLEI DDLTSNVEKP AENGLQFNDW DGLGEFDLYH  360
DAAMFLQDIG PIEQGIVPFS YTENMINQVS YPLEPQLQHQ SNTYHMDQEL QFQLNGTGVD  420
EQLQLQSNAF GNNQQVQSQL NTIGDNQPQL NAFEDGILNQ VGYQFHSSAN NMMDQQLVPN  480
STVDQVDYHL PFQSFGNEME RQLQMDQING SIWINDQSGD VFTPSGSNLG NASSSSGLVY  540
NGNNQDEGDK NGEGASRFST AVWSFVDSIP TTPASASESP SVNRAFERMS SFSRLRMNVR  600
NTNALTVNGG TTARRRSRNK GFFFFSILGA LCAILWFLIG MVRVVRSSIS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-49	21	147	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00179	DAP	Transfer from AT1G34190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446285.1	0.0	PREDICTED: NAC domain-containing protein 16-like isoform X1
TrEMBL	A0A0D2TVM3	0.0	A0A0D2TVM3_GOSRA; Uncharacterized protein
STRING	Gorai.009G260000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-111	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	Gorai.009G260000.1
Entrez Gene	105769884

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]