PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 340aa MW: 38267.4 Da PI: 9.6366

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G251700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Gorai.009G251700.1 18 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899***************************.*********996 PP
2	Myb_DNA-binding	61.3	2e-19	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Gorai.009G251700.1 70 RRPFTEEEEERLLAAHHIHGNK-WALIARLFP-GRTDNAVKNHWHV 113 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.997	13	64	IPR017930	Myb domain
SMART	SM00717	8.4E-15	17	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.05E-29	17	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-27	19	71	IPR009057	Homeodomain-like
Pfam	PF13921	2.5E-17	21	81	No hit	No description
CDD	cd00167	3.67E-14	21	62	No hit	No description
PROSITE profile	PS51294	28.098	65	119	IPR017930	Myb domain
SMART	SM00717	1.9E-16	69	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-22	72	118	IPR009057	Homeodomain-like
CDD	cd00167	5.81E-8	81	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEDSGAASSD DVNKTCPRGH WRPAEDEKLR QLVEQYGAQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFTEEEEER LLAAHHIHGN KWALIARLFP GRTDNAVKNH WHVIMARKQR 120 EQSKLCGKRS FQDAFSDSKL SSTGFSTSRK LARCQEAFSS RFGFGDSRFF DQFQNQGKDK 180 IFSVSSTSTT SSPSWNFASS TMVASNNPSS AQLSIRDGKN HLLRSGSSYY SMDTSKLLDQ 240 SLYKYHSNAS AYCSSFRNSS AFGIHNYRRV VPSPFGYLKL GDTFESNNGV MTKEFLSITD 300 NAPKSANLRV SNSQQEQEDE SDKPKDVPFI DFLGVGISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	18	118	7	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527082	1e-103	HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448228.1	0.0	PREDICTED: transcriptional activator Myb-like
TrEMBL	A0A0D2UTP9	0.0	A0A0D2UTP9_GOSRA; Uncharacterized protein
STRING	Gorai.009G251700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16592	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	2e-63	myb domain protein 52

Link Out ? help Back to Top
Phytozome	Gorai.009G251700.1
Entrez Gene	105771341

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]