PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G251700.1
Common NameB456_009G251700, LOC105771341
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 340aa    MW: 38267.4 Da    PI: 9.6366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G251700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181863147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Gorai.009G251700.1 18 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                        899*****************************.***********996 PP
2Myb_DNA-binding61.32e-1970113146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Gorai.009G251700.1  70 RRPFTEEEEERLLAAHHIHGNK-WALIARLFP-GRTDNAVKNHWHV 113
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9971364IPR017930Myb domain
SMARTSM007178.4E-151766IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-2917111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-271971IPR009057Homeodomain-like
PfamPF139212.5E-172181No hitNo description
CDDcd001673.67E-142162No hitNo description
PROSITE profilePS5129428.09865119IPR017930Myb domain
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2272118IPR009057Homeodomain-like
CDDcd001675.81E-881112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEDSGAASSD DVNKTCPRGH WRPAEDEKLR QLVEQYGAQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR RPFTEEEEER LLAAHHIHGN KWALIARLFP GRTDNAVKNH WHVIMARKQR  120
EQSKLCGKRS FQDAFSDSKL SSTGFSTSRK LARCQEAFSS RFGFGDSRFF DQFQNQGKDK  180
IFSVSSTSTT SSPSWNFASS TMVASNNPSS AQLSIRDGKN HLLRSGSSYY SMDTSKLLDQ  240
SLYKYHSNAS AYCSSFRNSS AFGIHNYRRV VPSPFGYLKL GDTFESNNGV MTKEFLSITD  300
NAPKSANLRV SNSQQEQEDE SDKPKDVPFI DFLGVGISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32181187107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270821e-103HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448228.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A0D2UTP90.0A0A0D2UTP9_GOSRA; Uncharacterized protein
STRINGGorai.009G251700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-63myb domain protein 52
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]