PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G243200.1

Common Name

B456_009G243200, LOC105769620

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 427aa MW: 47167.2 Da PI: 9.4987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G243200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	198	220	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Gorai.009G243200.1 198 SCPECGEIFMKAENLELHQAVrH 220 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	197	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	197	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.49E-24	222	425	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.0E-18	223	424	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KYHHRQQEQE EQQKLQPKKK 60 VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS 120 SRSMKAPLRE LNGVAVSSTN SSSLLSVSSA APPASSSAGG SFGGMPFRRF SGCYECKLVV 180 DPLLGISKDP SLRGTICSCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT SKNIVEIIFK 240 SSWLKKQTPI CQIDRILKVQ NTPKTISKFE EYRDSIKSKA TKKHPRCIAD GNELLRFHCT 300 TFACSLGLSG STNLCNTIPK CNVCSIIKNG FKVAQETNGK GILTTATSGK AHDKAAGVED 360 GDYEKRAMLV CRVIAGRVKK NIMEGDNMEE YDSVAGAVGV YSDLDELFVF NPNAILPCFV 420 VIYRGF*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAGSTHQRKP TMEAYQNQNK WPQKIDKPPS WAVLKGFFFG KYHHRQQEQE EQQKLQPKKK  60
VKKQKQQQKE QVMEETGKKC KKMRCSGSLC SNTKVIHCRP EMASPEVHKK RASFGSFDTS  120
SRSMKAPLRE LNGVAVSSTN SSSLLSVSSA APPASSSAGG SFGGMPFRRF SGCYECKLVV  180
DPLLGISKDP SLRGTICSCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT SKNIVEIIFK  240
SSWLKKQTPI CQIDRILKVQ NTPKTISKFE EYRDSIKSKA TKKHPRCIAD GNELLRFHCT  300
TFACSLGLSG STNLCNTIPK CNVCSIIKNG FKVAQETNGK GILTTATSGK AHDKAAGVED  360
GDYEKRAMLV CRVIAGRVKK NIMEGDNMEE YDSVAGAVGV YSDLDELFVF NPNAILPCFV  420
VIYRGF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445830.1	0.0	PREDICTED: uncharacterized protein LOC105769620
TrEMBL	A0A0D2UT53	0.0	A0A0D2UT53_GOSRA; Uncharacterized protein
STRING	Gorai.009G243200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	6e-97	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.009G243200.1
Entrez Gene	105769620

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]