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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G222900.1 | ||||||||
Common Name | B456_009G222900, LOC105765918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 39437.3 Da PI: 7.1896 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl Gorai.009G222900.1 14 KGPWSPEEDTKLKAYIEQHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ + G++ W+ Ia+ ++ gRt++++k++w++ Gorai.009G222900.1 69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.226 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.22 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDTKLKAYIE QHGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEHQSRRG NSLKQDMKRS SASVGDSMVP ADNINQIPYW PELPVLAAAA APIPHSSQEH 180 RIDSQASMRR LLIKLGGRFS EDDHVVNDGT TLHQFPNDLS TTDQDLYEQT VYVPSSSSSS 240 PMDALSLSNN IGSQFVNSQF AIDGGNLPIL QGQSTTFSSE LQEMGYSSNP QRLDGMEFLY 300 GEGMVDNRGV NPCESIGWGD TSSLVGPPCA SEYGVMQQGM LQEYGFSEMR YPGGAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440648.1 | 0.0 | PREDICTED: myb-related protein Hv1-like | ||||
TrEMBL | A0A0D2URZ0 | 0.0 | A0A0D2URZ0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5QCB5 | 0.0 | A0A2P5QCB5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G222900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 5e-79 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G222900.1 |
Entrez Gene | 105765918 |
Publications ? help Back to Top | |||
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