PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G219100.1

Common Name

B456_009G219100, LOC105767479

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 385aa MW: 42281.8 Da PI: 4.4887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G219100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.7e-10	302	342	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Gorai.009G219100.1 302 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 342 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.926	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-14	292	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-12	297	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.75E-12	301	346	No hit	No description
Pfam	PF00010	1.5E-7	302	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MESVAAFHDG PWDSFNIMFS NEDHLDFTHQ VLNQFSFPLE HDERLSFINP STFAPNLEAD 60 MSIAGVSQSL FSSSNALDSH FHYKTQESNQ SSNSSSNTFV PLPNYETSFL GGSSHMAVTN 120 DITMSLDIQM DIGGGSDKIT DSFPPAFPNI AMDDTVNVIE DSSTDCLPKL DGGYPADSAV 180 LADEILLKRQ FDVLELHDEG DKISTYSSET TKKRPRVSKD AAKAWNNVQL KKNNLNGSEE 240 STIGSDGQSS STSSSDDDNV CRDTNEVALA TSDPKASQAV DLNGKKRASR GSATDPQSLY 300 ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DELWMYAPIA 360 YNGVDIGLND KICTLLLPSK MQLG*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MESVAAFHDG PWDSFNIMFS NEDHLDFTHQ VLNQFSFPLE HDERLSFINP STFAPNLEAD  60
MSIAGVSQSL FSSSNALDSH FHYKTQESNQ SSNSSSNTFV PLPNYETSFL GGSSHMAVTN  120
DITMSLDIQM DIGGGSDKIT DSFPPAFPNI AMDDTVNVIE DSSTDCLPKL DGGYPADSAV  180
LADEILLKRQ FDVLELHDEG DKISTYSSET TKKRPRVSKD AAKAWNNVQL KKNNLNGSEE  240
STIGSDGQSS STSSSDDDNV CRDTNEVALA TSDPKASQAV DLNGKKRASR GSATDPQSLY  300
ARKRRERINE RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DELWMYAPIA  360
YNGVDIGLND KICTLLLPSK MQLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	304	KKRASRGSATDPQSLYARKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442484.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBL	A0A0D2TTM0	0.0	A0A0D2TTM0_GOSRA; Uncharacterized protein
STRING	Gorai.009G219100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20024	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G219100.1
Entrez Gene	105767479

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]