PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G214000.3
Common NameB456_009G214000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 259aa    MW: 28935.7 Da    PI: 8.8893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G214000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.97.9e-27281612128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81 
                         ppG+rF P++eel+++yL+ k ++   + ++     +i+e+++y+++P+dLp+       +  + ++ ++F+ +++k   g r +r +k g
  Gorai.009G214000.3  28 PPGCRFYPSEEELLNHYLTGKNSSVAADRSDaygsdFIRELHLYDYKPSDLPEgacfvhGY--KGRRRHWFCYTKSK---GGRGRRRAKGG 113
                         9******************998877733333334438***************556664322..44556667766554...6788888899* PP

                 NAM  82 yWkatgkdkevlskkgelvglkktLvfykgra.pkgektdWvmheyrl 128
                         +W++ gk k+v+  ++ + g+++ +vfy+ ++ + + +t W+m ey+l
  Gorai.009G214000.3 114 FWRKIGKVKDVFGGGNVKLGTRTKFVFYEMNSvKAALRTPWIMYEYAL 161
                         *************99999**********875505566*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3224177IPR003441NAC domain
PROSITE profilePS510053427177IPR003441NAC domain
PfamPF023655.8E-1728161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSNNQNSNLP LVDIGGGSSR ASSPYHFPPG CRFYPSEEEL LNHYLTGKNS SVAADRSDAY  60
GSDFIRELHL YDYKPSDLPE GACFVHGYKG RRRHWFCYTK SKGGRGRRRA KGGFWRKIGK  120
VKDVFGGGNV KLGTRTKFVF YEMNSVKAAL RTPWIMYEYA LLHRHKASFV LCRVFIKSRA  180
RNSVSENVLS CAEETVSAIR HIGIQHDGFL RPDTLEAEIN GDDFTKELDD PITTGPVSVA  240
SFEFPSGIPP DLPDDMVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14211789169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445211.10.0PREDICTED: NAC domain-containing protein 90-like
RefseqXP_012445213.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A0D2URL50.0A0A0D2URL5_GOSRA; Uncharacterized protein
STRINGGorai.009G214000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-15NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]