PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G214000.2

Common Name

B456_009G214000, LOC105769252

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 282aa MW: 31464.5 Da PI: 7.592

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G214000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.6	9.8e-27	28	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81 ppG+rF P++eel+++yL+ k ++ + ++ +i+e+++y+++P+dLp+ + + ++ ++F+ +++k g r +r +k g Gorai.009G214000.2 28 PPGCRFYPSEEELLNHYLTGKNSSVAADRSDaygsdFIRELHLYDYKPSDLPEgacfvhGY--KGRRRHWFCYTKSK---GGRGRRRAKGG 113 9****************998877733333334438************556664322..44556667766554...6788888899 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgra.pkgektdWvmheyrl 128 +W++ gk k+v+ ++ + g+++ +vfy+ ++ + + +t W+m ey+l Gorai.009G214000.2 114 FWRKIGKVKDVFGGGNVKLGTRTKFVFYEMNSvKAALRTPWIMYEYAL 161 ***********99999******875505566*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-31	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	34	27	177	IPR003441	NAC domain
Pfam	PF02365	7.2E-17	28	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSNNQNSNLP LVDIGGGSSR ASSPYHFPPG CRFYPSEEEL LNHYLTGKNS SVAADRSDAY 60 GSDFIRELHL YDYKPSDLPE GACFVHGYKG RRRHWFCYTK SKGGRGRRRA KGGFWRKIGK 120 VKDVFGGGNV KLGTRTKFVF YEMNSVKAAL RTPWIMYEYA LLHRHKASFV LCRVFIKSRA 180 RNSVSENVLS CAEETVSAIR HIGIQHDGFL RPDTLEAEIN GDDFTKELDD PITTGPVSVA 240 SFEFPSGIPP DLPDDMVGPR LTTSELLSII EADFIELDDL S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-14	21	178	9	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445211.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Refseq	XP_012445213.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A0D2TNZ0	0.0	A0A0D2TNZ0_GOSRA; Uncharacterized protein
STRING	Gorai.009G214000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-14	NAC family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G214000.2
Entrez Gene	105769252

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]