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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G208900.1 | ||||||||
Common Name | B456_009G208900, LOC105769181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27507.5 Da PI: 8.6451 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 35 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Gorai.009G208900.1 35 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.6e-17 | 89 | 131 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ Gorai.009G208900.1 89 PFSQAEDDTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.326 | 30 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-31 | 33 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-17 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-18 | 35 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 36 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.17E-15 | 37 | 79 | No hit | No description |
SMART | SM00717 | 1.0E-14 | 86 | 134 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.247 | 87 | 136 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.2E-14 | 89 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.75E-11 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEAVNGCSSS TSSSDASSSD SYLSARGSNR AEKIKGPWSA EEDRILTRLV ERYGPRNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPNVEHRPF SQAEDDTILA AHARYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRAREGQ HHHQQQQQQE HQQQILRVTH QPMDGGDHCA LGSTEVMIEE 180 EALTALTLAP PGSGVSSRSA VVVAERRREE RVPAEFWDVM RDVIAREVRE YMSSTLSAET 240 SAFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-42 | 32 | 136 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393793 | 1e-131 | GQ393793.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0758 SSR marker CGR5849 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445103.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | A0A0D2S5A3 | 0.0 | A0A0D2S5A3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G208900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14553 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-58 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G208900.1 |
Entrez Gene | 105769181 |
Publications ? help Back to Top | |||
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