PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G204700.2
Common NameB456_009G204700, LOC105770607
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 353aa    MW: 38613.7 Da    PI: 4.4444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G204700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.22.9e-142811821128
                 NAM  21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg 111
                         k ++g++l+  +vi++v+ y ++P++Lp       + ++f ++++++          t+ g Wk++ + +ev+s ++e +g +++L +y+g
  Gorai.009G204700.2  28 KITSGSPLPN-NVIDHVNPYGIDPKNLP-------EGVWFLINSKEE--------VDTEGGEWKTKEEGREVFS-DSEMIGWRTSLEYYEG 101
                         3455666777.89**************9.......334455544443........35899**************.999************* PP

                 NAM 112 rapkgektdWvmheyrl 128
                         r+p+ +kt+Wvm+ +++
  Gorai.009G204700.2 102 REPRQRKTEWVMEMFNV 118
                         ************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5058141IPR003441NAC domain
SuperFamilySSF1019413.66E-1920139IPR003441NAC domain
PfamPF023655.7E-620117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATPAAAPPP DISFKCTNMD ELFTCFVKIT SGSPLPNNVI DHVNPYGIDP KNLPEGVWFL  60
INSKEEVDTE GGEWKTKEEG REVFSDSEMI GWRTSLEYYE GREPRQRKTE WVMEMFNVTV  120
KRMCDEKEKH ETSSLCRVSL VPSHEMVENG TGNHLIPHLD LDAHSSSRNP QHEETEALAV  180
AERNEGENLF GTDSGGYDIG FFAGGNFLEL KDLDNPASPS SSSDNSSAIS ISSGECFDSL  240
AILQELDEQI LEQKDSGKKL DVLAGDKPNE LDMVPATLGC LVSVEGSNSS SEDDESFKTG  300
ASGDPNNQVA KRAKVEEGPS SSRKPSESHG GRRKGGSLGG MLRKKYFCFM PF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5871386e-60JX587138.1 Gossypium hirsutum clone NBRI_GE21148 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447336.10.0PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A0D2TSY90.0A0A0D2TSY9_GOSRA; Uncharacterized protein
STRINGGorai.009G204700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-07NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]