PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G203800.1 | ||||||||
Common Name | B456_009G203800, LOC105769102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 496aa MW: 51628.9 Da PI: 8.9192 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.009G203800.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.8 | 4.1e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Gorai.009G203800.1 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.17E-7 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.9E-5 | 69 | 91 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.9E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.17E-7 | 140 | 166 | No hit | No description |
SMART | SM00355 | 77 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 496 aa Download sequence Send to blast |
MVELENSSAM TVSTASGEAT ASSLGNQIQD NQLTGGGPPK KKRNLPGMPD PDAEVIALSP 60 KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH 120 NPARALGDLT GIKKHFCRKH GERKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF 180 SRRDSFITHR AFCDALAEES ARTQTLGVAN PEGNINVNGN GSGNTTMVGG GAAATSPPPQ 240 PLTPSTTSVV SPGLSIQSSE VPENPMGLSP AAATTATANV FASIFAPNSQ PSKISAPSSF 300 LQATTPLERT SLSLSSPLYL SNNGSSIFTR PENDHCHYAP SPQPAMSATA LLQKAAQMGA 360 AASNPSLLRG LGLAVSSASP AGQDPNVKSE SNTATASLGL GFPSNGSSEL TNPMIGSSSL 420 FGNKPTTLDL LGLGMADGGA SSSGLSALLT SFGGGFNAGA ATATSYGAGG SNNSPIETWE 480 GGAERKHNGP ANAML* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 2e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ526115 | 7e-42 | HQ526115.1 Gossypium herbaceum clone NBRI_D2_1707 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444978.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-144 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0D2TSX8 | 0.0 | A0A0D2TSX8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G203800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-126 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G203800.1 |
Entrez Gene | 105769102 |
Publications ? help Back to Top | |||
---|---|---|---|
|