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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.009G197300.1 |
Common Name | B456_009G197300, LOC105771209 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SRS |
Protein Properties |
Length: 312aa MW: 34381 Da PI: 8.3092 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G197300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 223.9 | 3.2e-69 | 86 | 246 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskk 82
r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++++++++++++l ++
Gorai.009G197300.1 86 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQTQQQQQQQNQQQEHQQLfrgdnpkrqrDNHG 176
7899******************************************************999999987777777777677777766322344 PP
DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ +l++t+ls ++ + le ++P+evss+avfrcv+vs++dd e e+aYqtav+i+GhvfkGiLyd+G+e+
Gorai.009G197300.1 177 SPSLACTRLSPTT--SGLELGQFPPEVSSPAVFRCVKVSAMDDVEGEFAYQTAVNIAGHVFKGILYDRGPES 246
4455666665554..5688899************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAGFFYLGGR EGAASGKQEG ENKEENLYFY RNEEIYNKGF EIWPQYYYQQ QNVNNLSFGA 60 GPSRRTTGFN LSDESSSRSA GFTVMRQGGM NCQDCGNQAK KDCAHLRCRT CCKSRGFQCQ 120 THVKSTWVPA AKRRERQQQL AALQQTQQQQ QQQNQQQEHQ QLFRGDNPKR QRDNHGSPSL 180 ACTRLSPTTS GLELGQFPPE VSSPAVFRCV KVSAMDDVEG EFAYQTAVNI AGHVFKGILY 240 DRGPESRYTS GGESSQQLNL ITTASTTAAA ATTTTTATTS DPGTSMIDPS LYPAPLNAFI 300 AGTQFFPPPR S*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GQ394263 | 1e-76 | GQ394263.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1228 SSR marker CGR6822 genomic sequence. |