PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G175300.2

Common Name

B456_009G175300, LOC105768218

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 333aa MW: 36746.1 Da PI: 8.043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G175300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.3e-06	224	261	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.009G175300.2 224 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 261 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-12	222	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.23E-6	222	265	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-9	226	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042631	Biological Process	cellular response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071472	Biological Process	cellular response to salt stress
GO:2000214	Biological Process	regulation of proline metabolic process
GO:2000377	Biological Process	regulation of reactive oxygen species metabolic process
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDSSQIQKEW SPRSYTSPGE DSSITTFKPL NQDFSLEQQR LNSLSSSGNS RPTCQFPIGS 60 VSYGYPSTLL QTLFDPDSQP QSQQLSLFNN NRSIDYMSAT ATYGANNATE SSPSWPRPAP 120 FVRPSLPKQQ PSNLHFTNNA PLWNASATGV NDVKAGFSPS QLQPEFLLQT FEEKPNCPSL 180 TKKTNTEEVR NSGSPVKKGL SSEPPLLKRP RIETPSPLPT FKVRKEKLGD RITALQQLVS 240 PFGKTDTASV LHEAIEYIKF LHDQVNVLIT PYMKQAVPST QQQSTESLKE PEGPKQDLRS 300 LGLCLVPISS TFPVANETTV DFWTPTFGGT FR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443486.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X1
Swissprot	Q8GXT3	2e-59	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A0D2QI19	0.0	A0A0D2QI19_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2S321	0.0	A0A0D2S321_GOSRA; Uncharacterized protein
STRING	Gorai.009G175300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G175300.2
Entrez Gene	105768218

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]