PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G175300.1
Common NameB456_009G175300, LOC105768218
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 467aa    MW: 50934.7 Da    PI: 5.3152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G175300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053583951254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.009G175300.1 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11356409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5356399No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8360401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAEEFHAGIC GETWWDSSKT LFTGCSSPCS TGLAADMGSF GWSADMVDIK ARSSCEESKD  60
SLAFPLGAQQ GDSDSCGSSI LNDSTLQMMG FGLSSSTTSG WNQSLLRSNG RSESYNSVLQ  120
EGINSRLSCR KETGMDSSQI QKEWSPRSYT SPGEDSSITT FKPLNQDFSL EQQRLNSLSS  180
SGNSRPTCQF PIGSVSYGYP STLLQTLFDP DSQPQSQQLS LFNNNRSIDY MSATATYGAN  240
NATESSPSWP RPAPFVRPSL PKQQPSNLHF TNNAPLWNAS ATGVNDVKAG FSPSQLQPEF  300
LLQTFEEKPN CPSLTKKTNT EEVRNSGSPV KKGLSSEPPL LKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLITPYMKQA VPSTQQQSTE  420
SLKEPEGPKQ DLRSLGLCLV PISSTFPVAN ETTVDFWTPT FGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443486.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A0D2QI190.0A0A0D2QI19_GOSRA; Uncharacterized protein
STRINGGorai.009G175300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-65bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]