PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G169200.1
Common NameB456_009G169200, LOC105768871
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 185aa    MW: 20909.8 Da    PI: 10.1221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G169200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-091361555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         + +Er+RR +++  ++eL +llP     +s+   s  + L +A  YIk+Lq
  Gorai.009G169200.1 13 RKVIERNRRTQMKALYSELYSLLPRH---SSREsKSLPDQLHEAASYIKKLQ 61
                        679**********************7...444448889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.988860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-101079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.69E-111075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-41365No hitNo description
PfamPF000108.6E-61461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNDNPNVSSR PDRKVIERNR RTQMKALYSE LYSLLPRHSS RESKSLPDQL HEAASYIKKL  60
QINLERMKEK KDSLMSVERL RNTRSRMTGK VPKSPQIQIH EMGSSLVIGL TTESNSRFLF  120
TQTIRVLQEE GAEIVNAGFS VVDDTVFHII NLTVAIIGHE SAPDYGGGRR ISERLNKFLN  180
DADA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850511e-59JX585051.1 Gossypium hirsutum clone NBRI_GE18508 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444559.11e-134PREDICTED: transcription factor bHLH36-like isoform X1
TrEMBLA0A0D2QHS61e-132A0A0D2QHS6_GOSRA; Uncharacterized protein
STRINGGorai.009G169200.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-47bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]