PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G169200.1

Common Name

B456_009G169200, LOC105768871

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 185aa MW: 20909.8 Da PI: 10.1221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G169200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	13	61	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +Er+RR +++ ++eL +llP +s+ s + L +A YIk+Lq Gorai.009G169200.1 13 RKVIERNRRTQMKALYSELYSLLPRH---SSREsKSLPDQLHEAASYIKKLQ 61 679********************7...444448889***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.988	8	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-10	10	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.69E-11	10	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-4	13	65	No hit	No description
Pfam	PF00010	8.6E-6	14	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MNDNPNVSSR PDRKVIERNR RTQMKALYSE LYSLLPRHSS RESKSLPDQL HEAASYIKKL 60 QINLERMKEK KDSLMSVERL RNTRSRMTGK VPKSPQIQIH EMGSSLVIGL TTESNSRFLF 120 TQTIRVLQEE GAEIVNAGFS VVDDTVFHII NLTVAIIGHE SAPDYGGGRR ISERLNKFLN 180 DADA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585051	1e-59	JX585051.1 Gossypium hirsutum clone NBRI_GE18508 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444559.1	1e-134	PREDICTED: transcription factor bHLH36-like isoform X1
TrEMBL	A0A0D2QHS6	1e-132	A0A0D2QHS6_GOSRA; Uncharacterized protein
STRING	Gorai.009G169200.1	1e-133	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G169200.1
Entrez Gene	105768871

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]