PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G166300.1
Common NameB456_009G166300, LOC105770471
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 322aa    MW: 36026.7 Da    PI: 9.5398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G166300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.7e-33682081128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+e++ e+L++kv ++       l   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Gorai.009G166300.1  68 LPAGVKFDPTDQEIL-EHLEAKVISDLrklhplL---DefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHt 153
                         799***********9.899999876664664432...222222333336**********.555666777******************7444 PP

                 NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v + +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Gorai.009G166300.1 154 deegsETRWHKTGKTRAVSV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 208
                         46555778***********9.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3863227IPR003441NAC domain
PROSITE profilePS5100533.83868227IPR003441NAC domain
PfamPF023652.3E-1569208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTWCNNPDDD ARAIKLVAAA TKEPSLAVAA TSAASYTKIH EIQTIICPSC GFNIPYQDQT  60
GIHDLPGLPA GVKFDPTDQE ILEHLEAKVI SDLRKLHPLL DEFIPTLEGE NGICYTHPEK  120
LPGVSKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEEGSET RWHKTGKTRA VSVGGAVKGF  180
KKILVLYTNY GRQRKPEKTN WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCGPGSVKY  240
TLDRKLKTRS RLHQSPNPMA KSSGSRGLFE HNNPPFIPYD DGSHHNRESP PQLIPNLVVQ  300
GDGSSFIRLT SDTSKGRVER K*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472040.0KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314383.10.0NAC domain-containing protein 73-like
RefseqXP_012447138.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotF4HY611e-118NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A0D2TR850.0A0A0D2TR85_GOSRA; Uncharacterized protein
TrEMBLW6JB970.0W6JB97_GOSHI; NAC domain protein NAC27
STRINGGorai.009G166300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-120NAC domain containing protein 10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]