PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G163400.1

Common Name

B456_009G163400, LOC105770711

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 276aa MW: 30539.6 Da PI: 7.7675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G163400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.5e-12	76	122	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP + +K++Ka+ L ++++ +k+L Gorai.009G163400.1 76 KNHSEAERRRRERINAHLDTLRTLLPCR-----QKMDKATLLGEVIKQLKEL 122 58***********************9.....8**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.866	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-10	76	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.57E-4	76	124	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-12	77	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAAYSFNNNF ASGNCYSGIF DPFSRDLDLC NESSHGGSLS VPQSLVLDHE KGELVKAPVE 60 VRKKSVSEEK IIAALKNHSE AERRRRERIN AHLDTLRTLL PCRQKMDKAT LLGEVIKQLK 120 ELKKNATEAS KGLLVPMDDD DEVRVEPCNV NEADGTFSFK ALICCDYRPQ LLTDLRQALD 180 ALPLPITIVK SEISTLGSRL KTDFIFTASY RSTSSVANVG NDDDGTDARR FLACSIRKAL 240 NSVLEKASIS PEHSPFLTFP NKRRRISYID SPSSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	ERRRRE
2	261	265	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447485.1	0.0	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A0D2UN84	0.0	A0A0D2UN84_GOSRA; Uncharacterized protein
STRING	Gorai.009G163400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G163400.1
Entrez Gene	105770711

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]