PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G147300.1
Common NameB456_009G147300, LOC105769289
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 379aa    MW: 41984.7 Da    PI: 4.7942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G147300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19108158155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Gorai.009G147300.1 108 SQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 158
                         78********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-22108168IPR016177DNA-binding domain
CDDcd000181.10E-32108167No hitNo description
PfamPF008478.4E-12108158IPR001471AP2/ERF domain
PROSITE profilePS5103223.947109166IPR001471AP2/ERF domain
SMARTSM003801.9E-36109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32109167IPR001471AP2/ERF domain
PRINTSPR003671.1E-11110121IPR001471AP2/ERF domain
PRINTSPR003671.1E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCGGAIISDF IAPVRSRRLT ADYLWPDLRK SQSKKASSNR YSKPAIDFTD NFEADFQDFK  60
DDKSDIEDYD VDDVLADAKP FAFSAAKKAS STVSHAQAEK SAKRKRKSQY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN TAEEAARAYD SEARRIRGKK AKVNFPDEMP RTSPKRVIKT  180
NDEKPLPMSN LSPVEPNINQ NFNCLNKPEQ VFYDTMGFVE EKAPMDPFAY VDTVPAAVDV  240
GLKPFGQSDN TPLYFSSDQG STSFDCSDFG WGEHGAKTPE ISSALEATME GDDFLVDANP  300
KKKLKPSSEN VMPIEDNSAE SLSDELLALG DQMKYPFLEG NWDATLDALL NGDASQYGGA  360
LTDLWSFGDF PAVAGGHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-211081681374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27560.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487912520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3725771e-138DQ372577.1 Gossypium hirsutum isolate vdrg18 disease resistance-related mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445270.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLA0A0D2UMB00.0A0A0D2UMB0_GOSRA; Uncharacterized protein
STRINGGorai.009G147300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-74related to AP2 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]