PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G143800.1
Common NameB456_009G143800, LOC105769266
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 327aa    MW: 35751.9 Da    PI: 9.4883
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G143800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.5e-31172227258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F
  Gorai.009G143800.1 172 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 227
                         8****************************.*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-35169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.263170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-26172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.8E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCTYVVGCSS LGNSTESQVQ QSSISESLTL KMGVLPQHFH NNEQLSFQFQ DQDSSSTQST  60
GQSYPEVASA KDRNLYGQTL TSASSGGNGT HGKLVGNHAK LAYVTGTQDH VFPPSQGYRK  120
PIVHIPHHYA NPYLGSVAAT AYGSQAMQIH HAHMMAMLPA RVPLPLDLKE GEPIYVNAKQ  180
YHAILRRRQY RAKLEAQNKL IKVRKPYMHE SRHLHAIKRA RGSGGQFLNT KKLQSKSTPT  240
SHGPDMSRSP QLHLSANISV TDVHQPENFK DSGSANSCSD VTSASNSDEI FQQPDFRFYG  300
YPSCHTGEAM PGHAGHILLS SNSRAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20172235366NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445237.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_012445238.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A0D2QFW90.0A0A0D2QFW9_GOSRA; Uncharacterized protein
STRINGGorai.009G143800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-57nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]