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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.009G142200.1 |
Common Name | B456_009G142200, LOC105771110 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MYB |
Protein Properties |
Length: 370aa MW: 40949.4 Da PI: 6.7917 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G142200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l+++v+ +G g+W+++++ g+ R++k+c++rw +yl
Gorai.009G142200.1 17 RGLWSPEEDEKLINYVTTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
788*******************************************97 PP
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2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 70 | 112 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+
Gorai.009G142200.1 70 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
899*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MMGHGHHSCC NKQKVKRGLW SPEEDEKLIN YVTTYGHGCW SSVPKLAGLQ RCGKSCRLRW 60 INYLRPDLKR GSFSPQEAAL IIELHSILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKFI 120 SHEVPALASF ADVHNFKPPD EAVDFVSLNV NPSLILSDQR DQLYLSPPLL QSFAQHHADF 180 KSNPSGDNVD LIHHHFPLTP MLPPPLSSAS SLDPSWPLPF ITSQHDLDHH QDKKHHVPVF 240 SNEVVHDIFN EKLMNSTAAI NLYDHPLMAA QTVPKLCEIL EGNLYNMPLT SVSLENIDPL 300 GSRLSTCLPI SAGSSYAHDM VVATNQMEFI DTIITSMPSA SSSSSSSLSA LSSGQYITNP 360 NLPSGGWDP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX578001 | 4e-98 | JX578001.1 Gossypium hirsutum clone NBRI_GE9934 microsatellite sequence. |