PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G141200.3
Common NameB456_009G141200, LOC105767723
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 590aa    MW: 63917.2 Da    PI: 9.0308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G141200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-0595117123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.009G141200.3  95 FVCEICNKGFQRDQNLQLHRRGH 117
                         89*******************88 PP
2zf-C2H212.50.00045171193123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.009G141200.3 171 WKCEKCSKKYAVQSDWKAHSKTC 193
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-594117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.93E-794117No hitNo description
SMARTSM003550.01795117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94995117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM0035567136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.93E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MMKSFMFHQQ QQQQQQQQQV LEENMSNLTS ASASGEASIS SGNRTEAGSN YPQQYFTTSQ  60
QPQTQPVKRK RNLPGNPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLKQRTNKE VRKKVYVCPE TNCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAVESARAI NPLLSPHQPG  240
TAAASHMNLQ VPQFNPHDIK LQAFSLKKEQ QSFTPLRPEI PPWLASQPML GAGPGPPHPI  300
DLSSPSSSIF SPRLDHQDLT LHGTPSANPS LVPTLPPYHH TALPSPHMSA TALLQKAAHM  360
GATMSRKSGS SSVPSTVAAA ASASLMRPHQ QTHVSPDSAG TNNNTTTAGF GLDLPSREEL  420
DVGSSSGIIH GLAPFGNRKP AANAGDDDDD NNNIAGSGAT PSLLQDMINS LSSATGFDAT  480
NSFDDIAFGG IFNATKKLCG SSINESFSKT TTPTVPTTTN GTRNDHHGST AGSTTTTTTQ  540
GGDQGLTRDF LGLRAFSHTD ILNIAGPGRN YCIDTSQEQH NQSQKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34167228364Zinc finger protein JACKDAW
5b3h_F3e-34167228364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121133KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271320.0HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442746.10.0PREDICTED: protein indeterminate-domain 7 isoform X2
SwissprotQ8H1F51e-120IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2QFQ20.0A0A0D2QFQ2_GOSRA; Uncharacterized protein
STRINGGorai.009G141200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.12e-99indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]