PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G139800.1 | ||||||||
Common Name | B456_009G139800, LOC105770915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 27011.4 Da PI: 8.4766 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.4e-40 | 17 | 77 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s Gorai.009G139800.1 17 EQEQLKCPRCDSTNTKFCYYNNYNLAQPRHFCKSCRRYWTKGGALRNIPVGGGTRKNSKRS 77 57899****************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-28 | 13 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-33 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQDPTGFQQM KAPVFPEQEQ LKCPRCDSTN TKFCYYNNYN LAQPRHFCKS CRRYWTKGGA 60 LRNIPVGGGT RKNSKRSSSS SDSSSQPKRQ SNPAPDSIRN QNLPDSSPPP TIPQQVLLSS 120 AVQNSVSNAD QTRMYVLSLD HQARKMTDSG GSFSSLLASS GQFGNLLNGL NPNGSGSETA 180 HTDDFGGNLA SGRGIGPSSD RDPRLRESNN NNDESYFGVQ GGGGGGDTNC WTGCSNGWPD 240 LAIYTPGSSF H* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447736.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Refseq | XP_016688490.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 1e-40 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A0D2QFK3 | 0.0 | A0A0D2QFK3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JDZ2 | 0.0 | A0A1U8JDZ2_GOSHI; dof zinc finger protein DOF3.1-like | ||||
STRING | Gorai.009G139800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-38 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G139800.1 |
Entrez Gene | 105770915 |
Publications ? help Back to Top | |||
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