PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G124600.1

Common Name

B456_009G124600, LOC105765939

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 272aa MW: 29555.8 Da PI: 8.4851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G124600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Gorai.009G124600.1 107 FSCNYCQRKFYSSQALGGHQNAH 129 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.25E-6	103	134	No hit	No description
PROSITE profile	PS50157	11.427	107	134	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MKPPKPSEPS LSETSTIISV SPAATLTTSA HDNTTLKQDK QPAAEAKEEA THHQGVDDDL 60 VLDLRLSNRD QSNPELNFID CFKADLSGDQ DSSELPPQGN ETEPRVFSCN YCQRKFYSSQ 120 ALGGHQNAHK RERTLAKRGQ RLGGGAAAAS LSAFGYPNTH PSRYSSLASL PLYGSFNKAL 180 GIREHSMIHK PSLVPSAHVY GHNGWSRRAV DQTRAVGHVS NLQGINGTAK FQGSVGKFGP 240 ATEGMNGHWW DTVNHFNNKK DELKLDLSLK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394097	5e-66	GQ394097.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1062 SSR marker CGR6530 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440674.1	0.0	PREDICTED: zinc finger protein 1
TrEMBL	A0A0D2UL07	0.0	A0A0D2UL07_GOSRA; Uncharacterized protein
STRING	Gorai.009G124600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	6e-37	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.009G124600.1
Entrez Gene	105765939

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]