PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

AP2

Protein Properties

Length: 353aa MW: 39672.5 Da PI: 7.1405

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G122000.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.5	1.8e-14	43	102	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg + +e Aa a++ a++k++g Gorai.009G122000.4 43 STYRGVTRHRWTGRFEAHLWDkNCWNEsqkKKgRQVYLGAYADEEAAAHAYDLAALKYWG 102 56*****************999977776447***********************98 PP
2	AP2	52.3	1.4e-16	143	194	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Gorai.009G122000.4 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 194 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.63E-16	43	112	IPR016177	DNA-binding domain
SMART	SM00380	3.1E-26	44	116	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.1E-16	44	111	IPR001471	AP2/ERF domain
Pfam	PF00847	4.7E-11	44	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.033	44	110	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-6	45	56	IPR001471	AP2/ERF domain
CDD	cd00018	1.41E-24	143	204	No hit	No description
SuperFamily	SSF54171	5.89E-18	143	204	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-12	143	194	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-25	144	208	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.3E-18	144	203	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.36	144	202	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-6	184	204	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH 60 LWDKNCWNES QKKKGRQVYL GAYADEEAAA HAYDLAALKY WGQDTVLNFP VSTYEKELKE 120 MESQSKEEYI GSLRSSGFAR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AAMAYDMAAI EYRGLNAVTN FDLSRYIGWL HPNDQSDSNN SSNPQQNFNG DTNSTPSPNH 240 DTKLEISIQS QTYCTSDTRL DDSNSNGSSS SASSALGHLL KSSKIKEMLD RTSEAACPST 300 PPEPNVPRRS FPDYIQTYFD CQDSSSYTED DDIIFGDLDS LAIPMFHCEL DG*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH  60
LWDKNCWNES QKKKGRQVYL GAYADEEAAA HAYDLAALKY WGQDTVLNFP VSTYEKELKE  120
MESQSKEEYI GSLRSSGFAR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AAMAYDMAAI EYRGLNAVTN FDLSRYIGWL HPNDQSDSNN SSNPQQNFNG DTNSTPSPNH  240
DTKLEISIQS QTYCTSDTRL DDSNSNGSSS SASSALGHLL KSSKIKEMLD RTSEAACPST  300
PPEPNVPRRS FPDYIQTYFD CQDSSSYTED DDIIFGDLDS LAIPMFHCEL DG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447649.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
Swissprot	Q94AN4	1e-122	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A0D2RZA0	0.0	A0A0D2RZA0_GOSRA; Uncharacterized protein
STRING	Gorai.009G122000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-96	ARIA-interacting double AP2 domain protein

Link Out ? help Back to Top
Phytozome	Gorai.009G122000.4

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]