PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

AP2

Protein Properties

Length: 352aa MW: 39579.5 Da PI: 7.6524

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G122000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.9	3.8e-11	43	99	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g + +e Aa a++ a++k++g Gorai.009G122000.2 43 STYRGVTRHRWTGRFEAHLWDkNCWNEsQKKKGRQGAYADEEAAAHAYDLAALKYWG 99 56*****************99998886655566888888************98 PP
2	AP2	52.3	1.4e-16	142	193	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Gorai.009G122000.2 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 193 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.83E-14	43	108	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.3E-12	44	108	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.545	44	107	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-18	44	113	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-7	44	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-6	45	56	IPR001471	AP2/ERF domain
CDD	cd00018	2.32E-24	142	203	No hit	No description
Pfam	PF00847	1.4E-12	142	193	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.89E-18	142	203	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.3E-18	143	202	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.36	143	201	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-25	143	207	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-6	183	203	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH 60 LWDKNCWNES QKKKGRQGAY ADEEAAAHAY DLAALKYWGQ DTVLNFPLAT YEKELKEMES 120 QSKEEYIGSL RRKSSGFARG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA 180 AMAYDMAAIE YRGLNAVTNF DLSRYIGWLH PNDQSDSNNS SNPQQNFNGD TNSTPSPNHD 240 TKLEISIQSQ TYCTSDTRLD DSNSNGSSSS ASSALGHLLK SSKIKEMLDR TSEAACPSTP 300 PEPNVPRRSF PDYIQTYFDC QDSSSYTEDD DIIFGDLDSL AIPMFHCELD G*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAKISHQNQK NGSGNEKTAA QPTTKLKRTR KTVPRHSPPQ RSSTYRGVTR HRWTGRFEAH  60
LWDKNCWNES QKKKGRQGAY ADEEAAAHAY DLAALKYWGQ DTVLNFPLAT YEKELKEMES  120
QSKEEYIGSL RRKSSGFARG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
AMAYDMAAIE YRGLNAVTNF DLSRYIGWLH PNDQSDSNNS SNPQQNFNGD TNSTPSPNHD  240
TKLEISIQSQ TYCTSDTRLD DSNSNGSSSS ASSALGHLLK SSKIKEMLDR TSEAACPSTP  300
PEPNVPRRSF PDYIQTYFDC QDSSSYTEDD DIIFGDLDSL AIPMFHCELD G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447650.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
Swissprot	Q94AN4	1e-121	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A0D2TNW8	0.0	A0A0D2TNW8_GOSRA; Uncharacterized protein
STRING	Gorai.009G122000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-95	ARIA-interacting double AP2 domain protein

Link Out ? help Back to Top
Phytozome	Gorai.009G122000.2
Entrez Gene	105770840

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]