PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 800aa MW: 88286.3 Da PI: 6.8246

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G109300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	603	640	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Gorai.009G109300.2 603 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 640 664459******************************87 PP
2	BELL	103.1	2e-33	463	532	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q+kkakL+ + eeV++rYk y++q+q+v+ssFe vaglg+a+pY+ lAlk+++r FrcL+ ai +qi Gorai.009G109300.2 463 HEYQQKKAKLVYMHEEVCRRYKLYHQQMQMVVSSFESVAGLGAATPYVPLALKTVARDFRCLRIAILDQI 532 799*****************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.5E-47	396	530	IPR006563	POX domain
Pfam	PF07526	4.7E-41	401	528	IPR006563	POX domain
PROSITE profile	PS50071	12.212	581	644	IPR001356	Homeobox domain
SMART	SM00389	4.1E-8	584	648	IPR001356	Homeobox domain
CDD	cd00086	1.01E-11	584	645	No hit	No description
SuperFamily	SSF46689	7.27E-17	585	651	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	587	648	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	601	640	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010076	Biological Process	maintenance of floral meristem identity
GO:0010077	Biological Process	maintenance of inflorescence meristem identity
GO:0010223	Biological Process	secondary shoot formation
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0048645	Biological Process	organ formation
GO:0080006	Biological Process	internode patterning
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MDMSKFRPES HVAQQRLRDK LRVQQSSKLV QQLEDFPNNL EDGCSSVHPA LNPGLVHVRN 60 VRNDNLLYDP DVFSSDIIHV SSNSSVLPSQ RDPILHQEMQ TAPENRQLLA EESSFPGMSQ 120 SNLSKFDASS KVSGDPHDCG NWRGVDSQHN CDWMVGYASG LAGSESNQDP RFVGEVISNN 180 ARILNSAYQD VQSTHPNPGS EIYCLERNLH FVSPSLYQNS LQDVVTTAQG LEVGSHEPQN 240 VREAARGSRI DYCGNEANPL HFGNTGTWMN TPLGEQSQQL GAELGFLASK SSVELGAAAS 300 DATTHGLSLS LSSHPTPKIC GADPVQFTGS QYYSDGFHSK PGEFKELRDS KTSNLGHFFS 360 MQKSSSTSKA DGKSLQDAGG TSAYVHRQTI PLGPFTGYAT ILKNSRFLKP AQELLDEFCH 420 LSNSKPVKVC DTSEGNPGEV SACKESNSGV SATFYSSNES CKHEYQQKKA KLVYMHEEVC 480 RRYKLYHQQM QMVVSSFESV AGLGAATPYV PLALKTVARD FRCLRIAILD QIKHVSRALG 540 EDLLSPTTGT SGSKGDINMS RLKCFGQKSG GVNMGFLEPQ QHSWRPQRGL PERSVAILRA 600 WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLESKCLAEG 660 NQNLSKSEGK STSEGRISCP NDGQSINRSC VNALSDKQLA CADMLVADAH DLEHWNHEKR 720 SSMDFHIPTS MEGSLMGFAP YQQSRLENGG LGAVSLTLGL MHGVESAQQQ QRQQQQQYQQ 780 QEHHSRRQFG GHLIHDFAG*

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MDMSKFRPES HVAQQRLRDK LRVQQSSKLV QQLEDFPNNL EDGCSSVHPA LNPGLVHVRN  60
VRNDNLLYDP DVFSSDIIHV SSNSSVLPSQ RDPILHQEMQ TAPENRQLLA EESSFPGMSQ  120
SNLSKFDASS KVSGDPHDCG NWRGVDSQHN CDWMVGYASG LAGSESNQDP RFVGEVISNN  180
ARILNSAYQD VQSTHPNPGS EIYCLERNLH FVSPSLYQNS LQDVVTTAQG LEVGSHEPQN  240
VREAARGSRI DYCGNEANPL HFGNTGTWMN TPLGEQSQQL GAELGFLASK SSVELGAAAS  300
DATTHGLSLS LSSHPTPKIC GADPVQFTGS QYYSDGFHSK PGEFKELRDS KTSNLGHFFS  360
MQKSSSTSKA DGKSLQDAGG TSAYVHRQTI PLGPFTGYAT ILKNSRFLKP AQELLDEFCH  420
LSNSKPVKVC DTSEGNPGEV SACKESNSGV SATFYSSNES CKHEYQQKKA KLVYMHEEVC  480
RRYKLYHQQM QMVVSSFESV AGLGAATPYV PLALKTVARD FRCLRIAILD QIKHVSRALG  540
EDLLSPTTGT SGSKGDINMS RLKCFGQKSG GVNMGFLEPQ QHSWRPQRGL PERSVAILRA  600
WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLESKCLAEG  660
NQNLSKSEGK STSEGRISCP NDGQSINRSC VNALSDKQLA CADMLVADAH DLEHWNHEKR  720
SSMDFHIPTS MEGSLMGFAP YQQSRLENGG LGAVSLTLGL MHGVESAQQQ QRQQQQQYQQ  780
QEHHSRRQFG GHLIHDFAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	590	648	5	63	Homeobox protein Meis2
4xrm_B	1e-15	590	648	5	63	Homeobox protein Meis2
4xrs_A	1e-15	590	647	1	58	Homeobox protein Meis1
4xrs_B	1e-15	590	647	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964539	1e-117	JX964539.1 Gossypium hirsutum clone NBRI_TRANS-808 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448028.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_012448029.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_012448030.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
TrEMBL	A0A0D2RYE1	0.0	A0A0D2RYE1_GOSRA; Uncharacterized protein
STRING	Gorai.009G109300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	9e-89	BEL1-like homeodomain 8

Link Out ? help Back to Top
Phytozome	Gorai.009G109300.2
Entrez Gene	105771163

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]