|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.009G104200.1 |
Common Name | B456_009G104200, LOC105770460 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
AP2 |
Protein Properties |
Length: 487aa MW: 53500.2 Da PI: 6.3271 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G104200.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 155 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Gorai.009G104200.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 204
78*******************......55************************997 PP
|
2 | AP2 | 41.2 | 4.2e-13 | 247 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Gorai.009G104200.1 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 297
89********.7******5553..2.26**********99**********99776 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MLDLNLNVAS TESTQDSACA TLVTNKLNEY CGNQMDESET SNSSIVNDDD ESCSTRANGD 60 AFTLSFDILK VGSGETEYGN DGAPVVVTKE LFPVKRVGED FRSPEGQSSG SSNYNKWIDL 120 SFERKEVADP RVMQQQQPSQ TTVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHS AARAYDRAAI KFRGVDADIN FSLSDYEDDM KQMKNLTKEE FVHILRRQST 240 GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EVEAARAYDK AAIKCNGREA 300 VTNFEPSSYE GDIILDTSNE GNTHNLDLNL GISPPVGNGS VENEEHPHFH SGTSDINGGK 360 SLRAENPAAA TVGPAYKGLA GTSDQPILWN SVYPRCFPSE ERAMVRRVDI GPPQGPPNWT 420 CQMRSQVRAT ATPLFSTAAS SGFSYLASTP AAAKPINQMT QNLCFTSSTA TATNTAEINF 480 QMQPPP*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |