PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G098100.1
Common NameB456_009G098100, LOC105771097
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 655aa    MW: 73749.5 Da    PI: 7.0732
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G098100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.88.2e-1172776463374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL++cA+ v+ +d++ a++lL+++s+++s +gd +qRla+yf +AL++rla+++   y  l +++ts    +++l+a+ ++  ++P+ k+
  Gorai.009G098100.1 277 SLLTQCAQSVAINDQRTANELLKQISQHSSDSGDGTQRLAHYFGNALQTRLAGKGAPSYLHLGSNKTS---AADVLKAYGVYLLACPFKKM 364
                         79***************************************************888888888777776...89****************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         s++ aN+ I+e +e ++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +
  Gorai.009G098100.1 365 SNFCANKKIMEVAEMATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFNVPFEYNV-I 454
                         ***********************************************************9****************************9.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ak++e+++leeL+++ +E+++Vn++++l++l+d++++ +s+rd+vLkl+ks++P ++++   +  +n++ F++rf eal ++sa fd +ea
  Gorai.009G098100.1 455 AKKWETIQLEELKINYDEVVVVNCMYRLKNLPDDTMAPTSARDTVLKLIKSINPAIFIHGVANGTYNAPFFVTRFREALFHFSAQFDIFEA 545
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++ re+ er+++E+e+lgr+++nvvaceg+er+er et+++W++r  +aGFk++pl+++ +k+++ +++  + + ++v+ +  ++++gWk+
  Gorai.009G098100.1 546 NVCREDAERMMYEKEVLGRDVMNVVACEGSERVERPETYKQWQARTLKAGFKQAPLEQQLMKKVRNMVQCNYHRDFSVDVDGRWMLQGWKG 636
                         ************************************************************************999**************** PP

                GRAS 365 rpLvsvSaWr 374
                         r ++++S+W+
  Gorai.009G098100.1 637 RVIYALSFWK 646
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.989249626IPR005202Transcription factor GRAS
PfamPF035142.8E-114277646IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MDTLFQDFPR FNFDNGSEPM YTNHNLVNGF KEGSPESPDG YASSSGSCVQ GHPLDNIPFA  60
NEMLKYINEM LMEEDLQEKS CMLQDCLALQ AAEKSFYEVL GHQYPLSLHP ISPFPDDNLT  120
QTSNSYNITG TNSVKSSTGM YGSLERTSLS EPFTESPHSG DKVLLPPQSS LSSPCVPDGR  180
YKSPLSSKGR KNYQREDGDY LEEGRISKQS ATSLEDSEQS DIFDEVLLCK GENEVSPKFS  240
LNGNSPKNAQ LKGSINGGTG SRRKKSSKRS EVVDLWSLLT QCAQSVAIND QRTANELLKQ  300
ISQHSSDSGD GTQRLAHYFG NALQTRLAGK GAPSYLHLGS NKTSAADVLK AYGVYLLACP  360
FKKMSNFCAN KKIMEVAEMA TTLHIVDFGI CYGFQWPCLI QRLSARAGGP PKLRITGIEF  420
PQPGFRPAER VEETGRRLKR YCERFNVPFE YNVIAKKWET IQLEELKINY DEVVVVNCMY  480
RLKNLPDDTM APTSARDTVL KLIKSINPAI FIHGVANGTY NAPFFVTRFR EALFHFSAQF  540
DIFEANVCRE DAERMMYEKE VLGRDVMNVV ACEGSERVER PETYKQWQAR TLKAGFKQAP  600
LEQQLMKKVR NMVQCNYHRD FSVDVDGRWM LQGWKGRVIY ALSFWKPVKN EPYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-482796468375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447954.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A0D2QCL20.0A0A0D2QCL2_GOSRA; Uncharacterized protein
STRINGGorai.009G098100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]