PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G092800.2

Common Name

B456_009G092800, LOC105769626

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 388aa MW: 42651.8 Da PI: 8.7168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G092800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	149	172	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H+ t H Gorai.009G092800.2 149 FPCTACGEIFQKSHLLEQHQATkH 172 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.847	149	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.18E-13	174	386	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.1E-6	321	386	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MAKANIGSFF NKFLSLFILL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST 60 WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTSARNSQH SLVSMSMINP PETHLSDSPP 120 PRSQIQSGSC PESGISSDYP FFPLRNDIFP CTACGEIFQK SHLLEQHQAT KHAVSELVDG 180 DSGNNIVRII FKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR 240 DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS 300 WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA 360 YTKLDEEELL VFNPRAVLPC FVIVYTV*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MAKANIGSFF NKFLSLFILL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST  60
WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTSARNSQH SLVSMSMINP PETHLSDSPP  120
PRSQIQSGSC PESGISSDYP FFPLRNDIFP CTACGEIFQK SHLLEQHQAT KHAVSELVDG  180
DSGNNIVRII FKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR  240
DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS  300
WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA  360
YTKLDEEELL VFNPRAVLPC FVIVYTV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445838.1	0.0	PREDICTED: uncharacterized protein LOC105769626
Refseq	XP_012445839.1	0.0	PREDICTED: uncharacterized protein LOC105769626
Refseq	XP_012445840.1	0.0	PREDICTED: uncharacterized protein LOC105769626
TrEMBL	A0A0D2TGH1	0.0	A0A0D2TGH1_GOSRA; Uncharacterized protein
STRING	Gorai.009G092800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G092800.2
Entrez Gene	105769626

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]