PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G087700.1
Common NameB456_009G087700, LOC105765871
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 252aa    MW: 27821.1 Da    PI: 4.7897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G087700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-1656106155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr+++   +Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a ++l+g
  Gorai.009G087700.1  56 PVFRGVRQRR-GSKWVSEIREPYK---KSRIWLGTFLSPEMAARAYDVAVLALRG 106
                         579****998.899*******765...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-956106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2057116IPR016177DNA-binding domain
SMARTSM003804.0E-3057120IPR001471AP2/ERF domain
PROSITE profilePS5103221.44357114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2857116IPR001471AP2/ERF domain
PRINTSPR003671.7E-95869IPR001471AP2/ERF domain
CDDcd000181.25E-2958116No hitNo description
PRINTSPR003671.7E-996116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEYLEIDSSS CKPCSPDSEL SSFSSTSSAY DLPLMVVSSS HKRKAGRKKF KETRHPVFRG  60
VRQRRGSKWV SEIREPYKKS RIWLGTFLSP EMAARAYDVA VLALRGKSAA LNFPDSASVL  120
PRAKSSSPKD IQIAAFAAAE AFKPITSTDI DPQPVGCSSS TSVSTENDEE KSLLDDGSMW  180
DRSWSLEATN TNDNEWNYGF MDEEALFNMP GLLDSMAEGL LLSSPAALQA QVYDCDDDVA  240
STFNIDLWRH Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0886050.0JX088605.1 Gossypium hirsutum cultivar TM-1 AP2/ERF domain-containing transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440588.10.0PREDICTED: ethylene-responsive transcription factor ERF024-like
TrEMBLA0A0D2TLZ20.0A0A0D2TLZ2_GOSRA; Uncharacterized protein
TrEMBLI7AI010.0I7AI01_GOSHI; AP2/ERF domain-containing transcription factor
STRINGGorai.009G087700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-46C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]