PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G078100.1

Common Name

B456_009G078100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 293aa MW: 33184.4 Da PI: 8.4312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G078100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F ++ + H+r H Gorai.009G078100.1 32 FFCRYCGKGFMSNKAMAGHLRIH 54 67*******************98 PP
2	zf-C2H2	13.1	0.00029	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++sFs+ +L +H + H Gorai.009G078100.1 82 FSCLVCTESFSSMKLLCQHTNIH 104 89******************997 PP
3	zf-C2H2	12.8	0.00037	217	237	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cgk+F + L H Gorai.009G078100.1 217 HQCEICGKTFETGQALGGHKT 237 79********99888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-5	30	59	No hit	No description
SMART	SM00355	0.015	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.508	32	59	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.062	34	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	56	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.84E-7	81	104	No hit	No description
SMART	SM00355	0.92	82	104	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.995	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.84E-7	212	239	No hit	No description
SMART	SM00355	0.1	217	239	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	217	244	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-9	217	240	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	219	239	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MVPADSCSLP FLGGKYLKTQ HAETPHDSRN SFFCRYCGKG FMSNKAMAGH LRIHSHHHPT 60 SKTELQQQQQ EDDDDDDDDD FFSCLVCTES FSSMKLLCQH TNIHRHMDSS QESNISSSGA 120 DTIVKQGNGP HTIDLLKDFN FKWSRTGKRG SNRITSQDAQ PLKLRVRPPH METRKNKKMK 180 TEDTSMEFEL GGTKSESGVD PCHARRSRKN KAVKSEHQCE ICGKTFETGQ ALGGHKTYHR 240 VKKNKVELLQ QGKTKQEPCM MTPMLLPHLS QQPDPSHPKT MLDFDLNIPY QQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394924	1e-126	GQ394924.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1947 SSR marker DPL0266 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604245.1	0.0	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A0D2RW78	0.0	A0A0D2RW78_GOSRA; Uncharacterized protein
STRING	Gorai.009G078100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18352	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29340.1	2e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G078100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]