PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G075900.1
Common NameB456_009G075900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 305aa    MW: 34587.6 Da    PI: 8.0727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G075900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-053656323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++C+k F+++  L  H+r H
  Gorai.009G075900.1 36 CTYCSKGFKSNKALAGHLRIH 56
                        *******************99 PP
2zf-C2H217.61.1e-0580102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C dC+ sFs+  +L +H+r+H
  Gorai.009G075900.1  80 FGCFDCDASFSSMKLLCQHMRLH 102
                         56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0313456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5723461IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-635102No hitNo description
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-43658IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.7E-43657IPR007087Zinc finger, C2H2
SMARTSM003550.1380102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01480107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576678.36E-5227256No hitNo description
PfamPF139121.8E-9227251IPR007087Zinc finger, C2H2
SMARTSM003550.97228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEFESGDWSE MCGDSDIKSA VMETKTLPDS RNRVFCTYCS KGFKSNKALA GHLRIHSQHP  60
PMSKTEGKHF QEGDDDDSFF GCFDCDASFS SMKLLCQHMR LHRDTDSNAA TTFKQGTGST  120
VSPRDDHHNI DLLKDFNGNW SRTEKRGSKR TASEHDIIYN AEPFKVYYGR MKTEETSMES  180
EWGAADNEST VELSGNRVKT CNSSNKSKSC HGRRRRSMKK TKAVKSVHRC EICDKTYETG  240
QALGGHKSYH RVKDPLKQRK TEQQSCGEVK MVTRMVLPGL PPEEADKNPS KRMLDFDFNI  300
SYEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604242.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D2TFJ00.0A0A0D2TFJ0_GOSRA; Uncharacterized protein
STRINGGorai.009G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.15e-06C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]