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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.009G075300.1 |
| Common Name | B456_009G075300 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 340aa MW: 35969 Da PI: 8.6277 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G075300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 205.2 | 1.8e-63 | 131 | 291 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93
+a+CqdCGnqakkdC+++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+
Gorai.009G075300.1 131 SGATCQDCGNQAKKDCSYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGLSgSTAGPKKPRLRTS-QTTTASHTSTSN 220
5679*********************************************99888777766655547888888888755.555555555555 PP
DUF702 94 .aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++++++l+t s lP++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++
Gorai.009G075300.1 221 aTTPPRSLDTCSspqnaefkepLPAQVRATAVFKCVRVTTIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 291
155678888888899******************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DPTALGVGVI PLLTAAPCLA 60
PHHAEDTDLL NNNDRSKFTG MRLWQKPNSS HYLIKSSSNP NNHNSSSMNL IQSSGGIGGT 120
GSGSGGSGLS SGATCQDCGN QAKKDCSYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180
LMTVGATAAG AGLSGSTAGP KKPRLRTSQT TTASHTSTSN ATTPPRSLDT CSSPQNAEFK 240
EPLPAQVRAT AVFKCVRVTT IEEGEDEFAY EAVVKIGGHV FKGLLYDQGV DGFPNISQLH 300
LSGRNGESSS SPVLDPSQVY EATTGGGLLR GSNYGCTRN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 4e-73 | Lateral root primordium (LRP) protein-related |
