PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G071900.2 | ||||||||
Common Name | B456_009G071900, LOC105770138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 46970.2 Da PI: 8.154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 357 | 402 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Gorai.009G071900.2 357 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 402 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 351 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 354 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-13 | 355 | 406 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-16 | 356 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 357 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-14 | 357 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MESDLQHHHH HHHLLDYHQS QHNQKQMNSG LTRYQSAPSS YFSNILDRDF CQEILNRPSS 60 PETERIIAKF LSSSGDAAGG GDANTETIPP QNLCTATQSS PVRETSVKIE QSAQIMTPTN 120 NQTGLMQQPN YSSASQNFYQ SQPPQYLLNQ QPSASAMDYT TPNPTGMKMG GGNNSNLIRH 180 SSSPAGLFSK INIENIAGYG VMRGMGDYGS VNSSNRETTF RSASRPPTPS GLMTPIAEMG 240 NKSMGPFSSE NAGFGENRPN NYSSGLPVTS WDDSMMISDN MSGIKRLRED DRSLSGLDGA 300 ETKNADGGNH RPPPLLAHHL SLPKSSDMSA IEKFLQYQDS VPCKIRAKRG CATHPRSIAE 360 RVRRTKISER MRKLQDLVPN MDKQTNTADM LDLAVDYIKD LQKQVKSLSD SRAKCSCAAQ 420 QQQQQQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446662.1 | 0.0 | PREDICTED: transcription factor bHLH122 isoform X1 | ||||
Refseq | XP_012446663.1 | 0.0 | PREDICTED: transcription factor bHLH122 isoform X1 | ||||
TrEMBL | A0A0D2RVR8 | 0.0 | A0A0D2RVR8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G071900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G071900.2 |
Entrez Gene | 105770138 |
Publications ? help Back to Top | |||
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