PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G071900.1
Common NameB456_009G071900, LOC105770138
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 427aa    MW: 46970.2 Da    PI: 8.154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G071900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12357402655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Gorai.009G071900.1 357 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 402
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288351401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16354417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-13355406No hitNo description
Gene3DG3DSA:4.10.280.103.7E-16356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9357402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MESDLQHHHH HHHLLDYHQS QHNQKQMNSG LTRYQSAPSS YFSNILDRDF CQEILNRPSS  60
PETERIIAKF LSSSGDAAGG GDANTETIPP QNLCTATQSS PVRETSVKIE QSAQIMTPTN  120
NQTGLMQQPN YSSASQNFYQ SQPPQYLLNQ QPSASAMDYT TPNPTGMKMG GGNNSNLIRH  180
SSSPAGLFSK INIENIAGYG VMRGMGDYGS VNSSNRETTF RSASRPPTPS GLMTPIAEMG  240
NKSMGPFSSE NAGFGENRPN NYSSGLPVTS WDDSMMISDN MSGIKRLRED DRSLSGLDGA  300
ETKNADGGNH RPPPLLAHHL SLPKSSDMSA IEKFLQYQDS VPCKIRAKRG CATHPRSIAE  360
RVRRTKISER MRKLQDLVPN MDKQTNTADM LDLAVDYIKD LQKQVKSLSD SRAKCSCAAQ  420
QQQQQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446662.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_012446663.10.0PREDICTED: transcription factor bHLH122 isoform X1
TrEMBLA0A0D2RVR80.0A0A0D2RVR8_GOSRA; Uncharacterized protein
STRINGGorai.009G071900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-63bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]