PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G068400.4 | ||||||||
Common Name | B456_009G068400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 27065.4 Da PI: 4.63 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 68 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gorai.009G068400.4 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.5E-6 | 3 | 36 | No hit | No description |
SMART | SM00355 | 54 | 4 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.63E-6 | 67 | 104 | No hit | No description |
Pfam | PF12171 | 5.6E-5 | 68 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 9.743 | 68 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 68 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.66E-10 | 168 | 235 | No hit | No description |
Pfam | PF12756 | 4.9E-10 | 182 | 235 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC 180 CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVPKL YICFCFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6qik_z | 1e-12 | 4 | 235 | 6 | 241 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qt0_z | 1e-12 | 4 | 235 | 6 | 241 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6qtz_z | 1e-12 | 4 | 235 | 6 | 241 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6ri5_z | 1e-12 | 4 | 235 | 6 | 241 | Cytoplasmic 60S subunit biogenesis factor REH1 |
6s05_z | 1e-12 | 4 | 235 | 6 | 241 | Cytoplasmic 60S subunit biogenesis factor REH1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726419.1 | 1e-161 | PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like | ||||
Swissprot | Q8H1G5 | 1e-105 | REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 | ||||
TrEMBL | A0A0D2RVE5 | 1e-178 | A0A0D2RVE5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G068400.1 | 1e-153 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G068400.4 |
Publications ? help Back to Top | |||
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