PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G055200.1
Common NameB456_009G055200, LOC105769169
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 451aa    MW: 47390.9 Da    PI: 6.7495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G055200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12246291555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Gorai.009G055200.1 246 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 291
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.19E-13239295No hitNo description
SuperFamilySSF474595.37E-17239301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16243300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQPCSREMQA MNSLLSPTQP IPLQDLQPNG NSGTHQAQIH NPQFDPTSSH DDFLDQMLST  60
LPSCSWSDLK SPWDPPKSDE TPPSNPDNNA GFHYDEILAS KLRQHQINGG GGGTTAAMKM  120
MMQQQMLLPG RPIAAAGGGG LTMPLHNDIV DGSPFKSPNQ QGGEGSVQAL YNGFGAGSLH  180
GTNNQSPNQP QHFHHPQGGN MQTQSFGATA GTVMNQSQAS GSTTGGTPAQ PKQRVRARRG  240
QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS  300
RLGGAAAVAP LVADMPPEGG DCVQTTAGGG GSLQRNSNGN QPSANNDSLT VTEHQVAKLM  360
EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPMMN KGSSSNHPLL QSNGDGPSSP  420
SMSVLTVQSA TMGNGGLDGS AKDAASVSKP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364327e-88KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445082.10.0PREDICTED: transcription factor bHLH66-like
TrEMBLA0A0D2TK100.0A0A0D2TK10_GOSRA; Uncharacterized protein
STRINGGorai.009G055200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-75LJRHL1-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]