PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G044300.1

Common Name

B456_009G044300, LOC105768935

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 524aa MW: 57343.9 Da PI: 8.9263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G044300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gorai.009G044300.1 61 FICEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	12.4	0.00047	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Gorai.009G044300.1 138 WKCEKCSKRYAVQSDWKAHSKIC 160 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.66E-6	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.022	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	61	83	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.3E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-4	126	159	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.66E-6	133	158	No hit	No description
SMART	SM00355	130	138	158	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MMKGLVVDES ISNLTSTSGE VSASTNQEPL SKKKRTLPGN PDPEAEVIAL SPKTLLATNR 60 FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVVRK KVYVCPETTC VHHHPSRALG 120 DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCDCG NLFSRRDSFI 180 THRAFCDALA EETARAITAA NQPGSSVSHI NMTNLESQPL LHGYALNATS LNRDQDHRFN 240 ARVEAAGPDS GPPSINLSSS PFLLGHPLPH DENPSQNPSS TTLLPFQAPP ASPHTSATAL 300 LQKAAQMGVT LSKPLQSPVV SMQRPYYYHH QAHMCGSTTF ATSRAWGLSA REELGSEFTH 360 SLSSFGNKAR VTPGFLEQVA NATKSNAGAG AGAAAPSSLL HDMMTSLSGT SELEGSSSFE 420 HSFNGTWITK RNSNKFQENY IDHHNFSETK ESQSCRSDNH EGKGSGSSSS NNIRGNDGLT 480 RDFLGLKAFP HTDIPNLVGL NHHVNSSSAY GQPNQHSETP WQG*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MMKGLVVDES ISNLTSTSGE VSASTNQEPL SKKKRTLPGN PDPEAEVIAL SPKTLLATNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVVRK KVYVCPETTC VHHHPSRALG  120
DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCDCG NLFSRRDSFI  180
THRAFCDALA EETARAITAA NQPGSSVSHI NMTNLESQPL LHGYALNATS LNRDQDHRFN  240
ARVEAAGPDS GPPSINLSSS PFLLGHPLPH DENPSQNPSS TTLLPFQAPP ASPHTSATAL  300
LQKAAQMGVT LSKPLQSPVV SMQRPYYYHH QAHMCGSTTF ATSRAWGLSA REELGSEFTH  360
SLSSFGNKAR VTPGFLEQVA NATKSNAGAG AGAAAPSSLL HDMMTSLSGT SELEGSSSFE  420
HSFNGTWITK RNSNKFQENY IDHHNFSETK ESQSCRSDNH EGKGSGSSSS NNIRGNDGLT  480
RDFLGLKAFP HTDIPNLVGL NHHVNSSSAY GQPNQHSETP WQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	134	201	3	70	Zinc finger protein JACKDAW
5b3h_F	3e-34	134	201	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	100	KLKQRTNKEVVRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614459	0.0	JX614459.1 Gossypium hirsutum clone NBRI_GE57848 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444679.1	0.0	PREDICTED: protein indeterminate-domain 2-like
TrEMBL	A0A0D2RTZ0	0.0	A0A0D2RTZ0_GOSRA; Uncharacterized protein
STRING	Gorai.009G044300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24560	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Gorai.009G044300.1
Entrez Gene	105768935

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]