PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 143aa MW: 15704.4 Da PI: 8.1986

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G037000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	6.1e-19	13	63	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+WvAe+r p++ r r++lg++ taeeAa+a++aa +l+g+ Gorai.009G037000.1 13 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTAEEAARAYDAAVFCLRGN 63 69***99.***999843...48**********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.879	13	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-31	13	71	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.6E-22	13	72	IPR016177	DNA-binding domain
SMART	SM00380	4.3E-35	13	76	IPR001471	AP2/ERF domain
CDD	cd00018	3.84E-27	13	72	No hit	No description
Pfam	PF00847	5.6E-13	13	62	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-10	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-10	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MVRPIGERDD GGRYKGVRMR KWGKWVAEVR QPNSRGRIWL GSYKTAEEAA RAYDAAVFCL 60 RGNSAKLNFP DNPPDIADAN ELTPDQIKEA AFRHARRDAG EEETEVAAAA AGNSYTECYF 120 GGGSVGDRSG RAYFHSPGVW TF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	12	70	13	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964641	2e-42	JX964641.1 Gossypium hirsutum clone NBRI_TRANS-910 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445861.1	1e-101	PREDICTED: ethylene-responsive transcription factor ERF017-like
Refseq	XP_016689790.1	1e-101	PREDICTED: ethylene-responsive transcription factor ERF017-like
Swissprot	Q84QC2	3e-35	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A0D2UFW4	1e-100	A0A0D2UFW4_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JHM4	1e-100	A0A1U8JHM4_GOSHI; ethylene-responsive transcription factor ERF017-like
TrEMBL	A0A2P5W336	1e-100	A0A2P5W336_GOSBA; Uncharacterized protein
STRING	Gorai.009G037000.1	1e-101	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	6e-30	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G037000.1
Entrez Gene	105769637

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]