PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G024700.1
Common NameB456_009G024700, LOC105770815
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 350aa    MW: 39642.8 Da    PI: 5.9611
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G024700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.3e-33111041103
                         HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
        HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                         +F+ k+y++++d+ ++++i+w + +nsf+v+d+  f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF++++F +g+ 
  Gorai.009G024700.1  11 SFVVKTYQMVNDPMTNTVITWGKANNSFIVIDHLVFTQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGQM 92 
                         59****************************************************************999.........************* PP

                         XXXXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkkse 103
                         +ll++i r+k++
  Gorai.009G024700.1  93 HLLKNIVRRKHN 104
                         ********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-478101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-329101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3410101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.1E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGNSTNIVA SFVVKTYQMV NDPMTNTVIT WGKANNSFIV IDHLVFTQRI LPVYFKHSNF  60
SSFVRQLNTY GFKKVDPDKW EFANEWFLRG QMHLLKNIVR RKHNKNLNRQ VKAEGLNEEE  120
EEEEEDIVME IAKLKEEQKS LEEEIKGMNK RLEATERRPQ QMMAFLYKVV EDPDLLPRML  180
LEKEHKKQLN PNKKRRLMTV MPSSAQSSSS SLAVSSNSVK SEEEDECHAG TISSLETGYG  240
IGNNNFRYSS YQSSPSPEDS KELLGHNNNQ FVGQFMNYGC ATVTRQLPSV IVAPSVIVNG  300
LTVSSSVTSS KAGYADRNEQ VGYFGELVAE EMEARPPLPY PFSLLEGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22910126129Heat shock factor protein 1
5d5v_B2e-22910126129Heat shock factor protein 1
5d5v_D2e-22910126129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674080.0KR067408.1 Gossypium hirsutum HSF27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447623.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV522e-84HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0D2UF110.0A0A0D2UF11_GOSRA; Uncharacterized protein
STRINGGorai.009G024700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-77heat shock transcription factor C1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]