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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.009G020200.1 |
Common Name | B456_009G020200, LOC105767694 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
RAV |
Protein Properties |
Length: 349aa MW: 39747.1 Da PI: 9.3732 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.009G020200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 31.6 | 4.1e-10 | 43 | 85 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
s++kGV + k +g+W A+++ n ++r++lg+f t+ +Aa a++ a
Gorai.009G020200.1 43 SQFKGVMRQK-NGKWGAQLYS---N--HTRIWLGTFKTEIDAAVAYDSA 85
789***8666.9******666...3..5**********99*******88 PP
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2 | B3 | 80.7 | 1.5e-25 | 166 | 263 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77
f+k+ltpsdv+k++rlv+pk++a ++ +k+++++l+++d+ r W+++++yr++s+++v+t+GW++F k+++Lk++
Gorai.009G020200.1 166 FQKKLTPSDVGKLNRLVIPKRYAVKYfpsifwtekenadvADSKTNDVELVFYDKFMRIWKFRYCYRNSSQSFVFTRGWNRFLKEKKLKAN 256
99********************************9999997778899******************************************** PP
-EEEEEE CS
B3 78 DfvvFkl 84
D+v F +
Gorai.009G020200.1 257 DVVSFFV 263
****974 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEEEILSVIS SGGGNTNSDV SNSISTTHQA NKRQRCGDKG NSSQFKGVMR QKNGKWGAQL 60 YSNHTRIWLG TFKTEIDAAV AYDSATIKFC PGDTHRNFPW NEITIEEPKF LSHYSAEAVL 120 SMIRDGSYQF KFMDFIKACS RSTKPNTAIK SVGTYSNEGL ICKQLFQKKL TPSDVGKLNR 180 LVIPKRYAVK YFPSIFWTEK ENADVADSKT NDVELVFYDK FMRIWKFRYC YRNSSQSFVF 240 TRGWNRFLKE KKLKANDVVS FFVCECRKEN EVQRFCMIDA NKSGNGGTFV AVNNIHVGIE 300 VDLQLRLGHY YPIGDEKHVQ EEQGSMAAAK PKQDDKTEGF KLFGMQIN*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX614752 | 1e-107 | JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence. |