PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G012300.2
Common NameB456_009G012300, LOC105767687
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 296aa    MW: 33294.5 Da    PI: 5.2568
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G012300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072472792254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp++e++++L +++gL+ +q+ +WF N+R +
  Gorai.009G012300.2 247 WPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 279
                         59*****************************87 PP
2ELK29.41.8e-10200221122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.009G012300.2 200 ELKHELKQGYKEKIVDIREEIL 221
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.8E-183579IPR005540KNOX1
PfamPF037904.6E-173777IPR005540KNOX1
SMARTSM012567.9E-2288143IPR005541KNOX2
PfamPF037912.4E-1594142IPR005541KNOX2
SMARTSM011886.1E-4200221IPR005539ELK domain
PROSITE profilePS512139.969200220IPR005539ELK domain
PfamPF037896.3E-7200221IPR005539ELK domain
PROSITE profilePS5007111.596220283IPR001356Homeobox domain
SuperFamilySSF466898.13E-16222285IPR009057Homeodomain-like
SMARTSM003899.9E-11222287IPR001356Homeobox domain
CDDcd000861.21E-11223284No hitNo description
Gene3DG3DSA:1.10.10.607.3E-25227284IPR009057Homeodomain-like
PfamPF059205.9E-18240279IPR008422Homeobox KN domain
PROSITE patternPS000270258281IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAFDGFVSDN TKDMQTLALN EPPPSAADID HWERAKCKAE IMGHPMYDQL LEAHVACLRV  60
ATPVDQLAQI DAQLARSQDV LAKYSSAAAA AGSAEEELDH FMANYVLLLG FFKDQLQQHV  120
RVHAMEAVMA CWDLEQSLQS LTGVSPGEGT GATMSDDEDE VVDSDTSLFD GSFDGIDSMG  180
FGPLVPSETE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSFLKAW  240
WQSHSKWPYP TEEDKAKLVQ ETGLQLKQIN NWFINQRKRN WHSNPSTSLK SKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276294RKRNWHSNPSTSLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442716.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_016690138.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480011e-158KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D2TH160.0A0A0D2TH16_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JN570.0A0A1U8JN57_GOSHI; homeobox protein knotted-1-like 3
STRINGGorai.009G012300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-147KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]